Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30382
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ... 122 3e-28
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ... 120 9e-28
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic... 33 0.18
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic... 33 0.18
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic... 33 0.18
At4g36120.1 68417.m05141 expressed protein 29 2.2
At2g32910.1 68415.m04035 expressed protein 29 3.0
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 5.2
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 5.2
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c... 28 5.2
>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
heme protein, mitochondrial precursor (Clone PC13III)
[Solanum tuberosum] SWISS-PROT:P25076
Length = 307
Score = 122 bits (293), Expect = 3e-28
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +1
Query: 1 HSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDG 180
H G SS DHAS+RRG++VY+QVC +CHS+ I++R+LV V +TE+EAKA AAE+ + DG
Sbjct: 80 HEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEVVDG 139
Query: 181 PDEEGNYFERPGKLSDYLPSPYPNE 255
P++EG F RPGKLSD LP PY NE
Sbjct: 140 PNDEGEMFTRPGKLSDRLPEPYSNE 164
Score = 122 bits (293), Expect = 3e-28
Identities = 52/93 (55%), Positives = 71/93 (76%)
Frame = +3
Query: 285 YPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEA 464
YPPDLSL+ R G++Y+FALLTGY +PPAG+ +REG +YNPYFPGGAI+M ++L DEA
Sbjct: 175 YPPDLSLVTKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEA 234
Query: 465 AEYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
EY DGTPAT +Q+ + + + EPE+++R
Sbjct: 235 VEYEDGTPATEAQMGKDVVSFLSWAAEPEMEER 267
>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
heme protein, mitochondrial precursor (Clone PC13III)
[Solanum tuberosum] SWISS-PROT:P25076
Length = 307
Score = 120 bits (289), Expect = 9e-28
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +1
Query: 1 HSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDG 180
H G SS DHAS+RRG++VY+QVC +CHS+ I++R+LV V +TE+EAKA AAE+ + DG
Sbjct: 80 HDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEVVDG 139
Query: 181 PDEEGNYFERPGKLSDYLPSPYPNE 255
P++EG F RPGKLSD P PY NE
Sbjct: 140 PNDEGEMFTRPGKLSDRFPQPYANE 164
Score = 118 bits (284), Expect = 4e-27
Identities = 52/93 (55%), Positives = 68/93 (73%)
Frame = +3
Query: 285 YPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEA 464
YPPDLSLI R G +Y+FALLTGY +PPAG+ +REG +YNPYFPGGAI+M ++L DEA
Sbjct: 175 YPPDLSLITKARHNGPNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEA 234
Query: 465 AEYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
EY DG PAT +Q+ + + EPE+++R
Sbjct: 235 VEYEDGVPATEAQMGKDIVSFLAWAAEPEMEER 267
>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 486
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 577 GQFAERSSSSGSGPPFQESRNILASCDAVAGVPSLYSAASSNRTCA-IEMAPP 422
GQF + + GS PP Q S + + D + S + S R C+ +++ PP
Sbjct: 384 GQFGQIAGEMGSRPPVQASSSYVNDLDLIGFTESQLLSESEKRLCSEVKLVPP 436
>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 483
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 577 GQFAERSSSSGSGPPFQESRNILASCDAVAGVPSLYSAASSNRTCA-IEMAPP 422
GQF + + GS PP Q S + + D + S + S R C+ +++ PP
Sbjct: 381 GQFGQIAGEMGSRPPVQASSSYVNDLDLIGFTESQLLSESEKRLCSEVKLVPP 433
>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 487
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 577 GQFAERSSSSGSGPPFQESRNILASCDAVAGVPSLYSAASSNRTCA-IEMAPP 422
GQF + + GS PP Q S + + D + S + S R C+ +++ PP
Sbjct: 385 GQFGQIAGEMGSRPPVQASSSYVNDLDLIGFTESQLLSESEKRLCSEVKLVPP 437
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 405 YNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
++ ++P S+++ FDE S+ PAT+ ++ ++S NG +P R
Sbjct: 430 HDHHYPPSVTSVSEDGFDEEGSSSECGPATSLDSHKVRKVSVNGSSKPRSSSR 482
>At2g32910.1 68415.m04035 expressed protein
Length = 691
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -3
Query: 405 SSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEP 259
+++P H Q++P + R+ + R Y P S P KH + P
Sbjct: 445 AAIPAQVTHTQQIPVPRDTDRKRSDRDRYAPGSSRGHPTRKHERRRASP 493
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -2
Query: 538 PPFQESRNILASCDAVAGVPSLYSAASSN-RTCAIEMAPPGKYGL*FCPSRST-TPAGGS 365
PP +ESR S AVAG P + AA T + A PG G P R PA G
Sbjct: 88 PPPEESRAKAGSAAAVAG-PGIGRAAGRGVPTGPLVQAQPGLSG----PVRGVGGPAPGM 142
Query: 364 M*P-VSSAKM*SSPP-LRP 314
M P +S S+PP +RP
Sbjct: 143 MQPQISRPPQLSAPPIIRP 161
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -2
Query: 538 PPFQESRNILASCDAVAGVPSLYSAASSN-RTCAIEMAPPGKYGL*FCPSRST-TPAGGS 365
PP +ESR S AVAG P + AA T + A PG G P R PA G
Sbjct: 88 PPPEESRAKAGSAAAVAG-PGIGRAAGRGVPTGPLVQAQPGLSG----PVRGVGGPAPGM 142
Query: 364 M*P-VSSAKM*SSPP-LRP 314
M P +S S+PP +RP
Sbjct: 143 MQPQISRPPQLSAPPIIRP 161
>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
contains Pfam glycosyl transferase, group 1 family
protein domain PF00534; C-terminal portion similar to
mannosyltransferase GB:BAA28328 [Escherichia coli]
Length = 487
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 431 GTSWEVWIVVLSLT*HYTSRRFHVTSQ*REDV 336
G S E W VLSL H T+ RF +T + D+
Sbjct: 98 GYSSEAWSYVLSLRNHLTNPRFRITIEHHGDL 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,079,246
Number of Sequences: 28952
Number of extensions: 342769
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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