Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30380
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.35 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 512 NDRPVKDVVISDTETEVVAEPFSVTKESAH 601
           ND+ VKD+VI   ET +++  F++ +   H
Sbjct: 644 NDKAVKDLVILLFETALLSSGFTLDEPQVH 673


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 364 IDNQPAP*CFSLKFSSSKRSPYI 296
           + NQ +  CFSLK  + K  P++
Sbjct: 517 LGNQNSEMCFSLKLKNKKLPPFL 539


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 109 DNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK-NFMIQV 258
           DNI   +I  + K +     +  +  +K E   ++   FH++ K  ++++V
Sbjct: 124 DNIVKPIIAFYYKPIKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEV 174


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 671 PWESW*RHSSWKLLIIRTFIIKFSEHSLW 585
           PW++   H  W+ L +    I   E  LW
Sbjct: 527 PWQTVYNHRPWQQLHLNKKQILGGEACLW 555


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,033
Number of Sequences: 336
Number of extensions: 3424
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)