Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30380
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 115 6e-27
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 114 1e-26
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 102 6e-23
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 96 5e-21
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 89 4e-19
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 80 4e-16
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 68 1e-12
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 44 3e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.070
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.6
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 3.5
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 26 4.6
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 115 bits (277), Expect = 6e-27
Identities = 52/68 (76%), Positives = 59/68 (86%)
Frame = +3
Query: 291 RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+SIYGE+F DENF LKH G LSMANAG +TNGSQFFITTV TPWLDG+HVVFG+V EG
Sbjct: 74 KSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEG 133
Query: 471 MDVVQKIE 494
MDVV+K+E
Sbjct: 134 MDVVKKVE 141
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/56 (48%), Positives = 31/56 (55%)
Frame = +1
Query: 88 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
FD+ +G IV LF VPKT NF L +G GY GS FHRVI FM+Q
Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQ 61
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 114 bits (274), Expect = 1e-26
Identities = 52/72 (72%), Positives = 57/72 (79%)
Frame = +3
Query: 291 RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+SIYG RF DENFKL H G LSMANAG D+NGSQFFITTVKTPWLDG HVVFG+VL G
Sbjct: 99 KSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSG 158
Query: 471 MDVVQKIEMTVT 506
D+V+KI T
Sbjct: 159 YDIVKKISKAET 170
Score = 89.8 bits (213), Expect = 3e-19
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +1
Query: 58 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 237
+GPKVT V FD++ GD+ +G + IGLFGKTVPKT ENF LA +G GY+GS FHRVI
Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80
Query: 238 KNFMIQ 255
NFMIQ
Sbjct: 81 PNFMIQ 86
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 102 bits (244), Expect = 6e-23
Identities = 48/67 (71%), Positives = 55/67 (82%)
Frame = +3
Query: 294 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 473
SIYGE+FEDENF+LKH LSMANAG +TNGSQFFITTV TP LDG+HVVFGKV++G
Sbjct: 80 SIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGK 139
Query: 474 DVVQKIE 494
V+ IE
Sbjct: 140 STVRTIE 146
Score = 53.6 bits (123), Expect = 3e-08
Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 79 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 246
K+S D KI TI LF VPKT +NF L E +G YKGS+FHRVIKNF
Sbjct: 8 KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63
Query: 247 MIQ 255
M+Q
Sbjct: 64 MLQ 66
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 95.9 bits (228), Expect = 5e-21
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Frame = +3
Query: 294 SIYGER-FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+I+ R F DENF LKH G LSMANAGKD+NG QFFITTV +LDG+HVVFG+V+EG
Sbjct: 84 TIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEG 143
Query: 471 MDVVQKIEMTVTG 509
D+V++IE T G
Sbjct: 144 YDIVKEIESTPVG 156
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/66 (46%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +1
Query: 82 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 237
V D+ I +G I I LF VPKT ENF Q QKP G YK S FHR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64
Query: 238 KNFMIQ 255
+ FMIQ
Sbjct: 65 QGFMIQ 70
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 89.4 bits (212), Expect = 4e-19
Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = +3
Query: 294 SIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
SIYG++F+DE + L H GAG LSMANAG +TN SQFFIT TPWLDG+H +FG+V+ G
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 471 MDVVQKIEMTVT 506
+ V +++ + T
Sbjct: 126 LSVCKRMGLIRT 137
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +1
Query: 112 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
++G I+I L+ + PKT +NF+ LA+ EG Y G FHRVI +F+IQ
Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQ 53
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 79.8 bits (188), Expect = 4e-16
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 SIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
SI+ + FEDE + LKH +SMAN+G +TNGSQFFITT TPWLDG+H +F + G
Sbjct: 519 SIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAG 578
Query: 471 MDVVQKIEMTVTGR 512
+DVV +IE T +
Sbjct: 579 LDVVHRIEQGETDK 592
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +1
Query: 118 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
G I I L+ + PK +NF A E Y + FHR+IKNFMIQ
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQ 506
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 291 RSIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLE 467
+SI+G+ F+DE LKH G +SMAN GK+TNGSQFFI LD +H +FG+V+
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVG 398
Query: 468 GMDVVQKIEMTVT 506
G++V+ +E T
Sbjct: 399 GLNVLDALEKVPT 411
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 112 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
N G I I L P NF QLA++ Y+ + FHR I FMIQ
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQ 327
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 294 SIYGERFEDENF-KLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 464
SIYGE F E +L+ G + MA + N SQFFIT TP +G+ +FG+V+
Sbjct: 77 SIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
Score = 35.9 bits (79), Expect = 0.006
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +1
Query: 118 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQ
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQ 64
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.070
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 106 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
+ +G +VI LF K PKT ENF +L + + Y F+ + N+ Q
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQ 52
Score = 32.3 bits (70), Expect = 0.070
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = +3
Query: 303 GERFEDENFK--LKHYGAGWLSMANA---GKDTN----GSQFFIT-TVKTPWLDGRHVVF 452
G RF F L H G +SM+ A +D GSQF IT + LD R+ ++
Sbjct: 74 GTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEGLDERYPIY 133
Query: 453 GKVLEGMDVVQKI 491
G+V EG D + KI
Sbjct: 134 GQVAEGFDTLLKI 146
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -1
Query: 419 LNSCDEKLRSICVFACISHR*PTSTIVL-----QLEVFIFKTFTIYTAPSSSITLGKITT 255
L S D K+RSI F I + P T +L Q EV++ + T +P SS+T+ ++
Sbjct: 1206 LKSSDVKIRSIYDF--IPTKDPNGTKLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSL 1263
Query: 254 WIMKFLITLWNLLPLYPSPSGF 189
+ +W+L + P +
Sbjct: 1264 CSSGYESIVWDLTSILFDPKNY 1285
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 583 DTERFSYNFSFRVRYNNIFDWAIIRPVTVISIF 485
+TE + F+F+ R +W++IRP IF
Sbjct: 372 ETEGMEWAFAFKSRSRITVNWSLIRPFIASIIF 404
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +1
Query: 100 IGDDNIGTIVIGLFGKTVPKTT------ENFFQLAQKPEGEGYKGSKFHRVIKNFMIQVV 261
IG + G +V G T PK F LA K + +K ++ +M +
Sbjct: 112 IGGFSQGCMVSLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEIPILLTYMTEDP 171
Query: 262 ILPRVMELEGAVYMVNVLKMK 324
I+P V+ A Y++N L++K
Sbjct: 172 IVPSVLSSASAKYLINNLQLK 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,935
Number of Sequences: 5004
Number of extensions: 58752
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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