Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30380
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 8e-31
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 113 2e-25
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 4e-24
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 88 6e-18
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 86 3e-17
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 80 2e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 75 4e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 60 2e-09
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 35 0.075
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 32 0.53
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 29 3.7
SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9) 28 8.6
SB_28367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 130 bits (315), Expect = 8e-31
Identities = 56/63 (88%), Positives = 62/63 (98%)
Frame = +3
Query: 291 RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+SIYG++F DENFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+G
Sbjct: 117 KSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKG 176
Query: 471 MDV 479
M+V
Sbjct: 177 MEV 179
Score = 44.0 bits (99), Expect = 1e-04
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Frame = +1
Query: 19 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-------------GKTVPK 159
L F+AS+ + K P VT KV FD+ IG + G I IGLF +++
Sbjct: 12 LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67
Query: 160 TTENFFQ-----LAQKPEGEGYKGSKFHRVIKNFMIQ 255
T +F + +G GYK S FHRVI++FMIQ
Sbjct: 68 TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQ 104
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 122 bits (295), Expect = 2e-28
Identities = 53/69 (76%), Positives = 60/69 (86%)
Frame = +3
Query: 294 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 473
SIYG+ F+DENF LKHYG GWL MANAGK+TNGSQF+ITT+KT WLDG H FGKVLEGM
Sbjct: 99 SIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGM 158
Query: 474 DVVQKIEMT 500
DVV++IE T
Sbjct: 159 DVVRRIENT 167
Score = 81.0 bits (191), Expect = 9e-16
Identities = 41/79 (51%), Positives = 49/79 (62%)
Frame = +1
Query: 19 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 198
L+F+A +D VT KV D+ IG G +++GLFG T PKT NF LA K +
Sbjct: 8 LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66
Query: 199 GEGYKGSKFHRVIKNFMIQ 255
G GYK S FHRVIKNFMIQ
Sbjct: 67 GFGYKDSIFHRVIKNFMIQ 85
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 113 bits (271), Expect = 2e-25
Identities = 50/68 (73%), Positives = 59/68 (86%)
Frame = +3
Query: 291 RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT WLDG+HVVFG V+EG
Sbjct: 209 KSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEG 268
Query: 471 MDVVQKIE 494
DVV+K+E
Sbjct: 269 FDVVRKME 276
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/63 (47%), Positives = 38/63 (60%)
Frame = +1
Query: 67 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 246
+V +V FD+ IG+ + G IV+ L VP T ENF L +G GYKGS FHR+I F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193
Query: 247 MIQ 255
M Q
Sbjct: 194 MCQ 196
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 108 bits (260), Expect = 4e-24
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +3
Query: 291 RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
+SIYG +F DENF LKH G G LSMANAG TNGSQFF+ T KT WLDG+HVVFG V +G
Sbjct: 75 KSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDG 134
Query: 471 MDVVQKIE 494
MDVV+KIE
Sbjct: 135 MDVVKKIE 142
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/64 (51%), Positives = 38/64 (59%)
Frame = +1
Query: 64 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 243
PK T+ FD++IG G IV+ L VPKT ENF L +G GYKGS FHRVI
Sbjct: 2 PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58
Query: 244 FMIQ 255
FM Q
Sbjct: 59 FMCQ 62
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 90.2 bits (214), Expect = 1e-18
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +3
Query: 363 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIE 494
MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K+E
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE 44
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 88.2 bits (209), Expect = 6e-18
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Frame = +3
Query: 294 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 470
SI+G FEDE + L+H +SMANAG +TNGSQFFIT V TPWLD +H VFG+V++G
Sbjct: 8 SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKG 67
Query: 471 MDVVQKIEMTVT 506
MDV Q+I + T
Sbjct: 68 MDVAQQISLVKT 79
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +3
Query: 336 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMT 500
+H G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV+++E T
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEAT 242
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 80.2 bits (189), Expect = 2e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +3
Query: 294 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 473
S+YG FEDE+F + H G + MAN G+ TNGSQF+IT PW+D ++V FG+V+EG+
Sbjct: 51 SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGL 110
Query: 474 DVVQKIE 494
+V+ +E
Sbjct: 111 NVLDVLE 117
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +3
Query: 357 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 491
LSMANAG TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 3 LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/71 (49%), Positives = 43/71 (60%)
Frame = +3
Query: 294 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 473
SIYG F DE F+ KH LSMAN G +TNGSQFFI HVVFG V++G
Sbjct: 31 SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGE 80
Query: 474 DVVQKIEMTVT 506
++V++IE T
Sbjct: 81 ELVRQIESLPT 91
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 306 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 464
E +DE L H G +SMAN G ++NGSQFFI K P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +3
Query: 339 HYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGR-----HVVFGKVLEGMDVVQKIEMT 500
H G L+MA +D+ SQFFI +LD + VFGKV++GMDVV KI
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKIAQV 160
Query: 501 VT 506
T
Sbjct: 161 PT 162
Score = 34.3 bits (75), Expect = 0.099
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 112 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 255
++G I I L P +T NF LA G Y G++FHRVI FM+Q
Sbjct: 31 SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 34.7 bits (76), Expect = 0.075
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 112 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 240
++G I I L+GK PK NF QL EG Y + FHR++K
Sbjct: 11 SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +1
Query: 118 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 231
G ++ LF VPKT ENF L +G G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 360 ITNQHHSASA*SFHLQNVHHIYCALQFHHPW*NHHLDHE 244
+++ HH +H N HH + HH + +HHLD++
Sbjct: 77 LSSIHHRYRDYFYHSYNYHHKWQHYHHHHHY-HHHLDYD 114
>SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = -1
Query: 410 CDEKLRSICVFACISHR*PTSTIVLQLEVFIFKTFTIYTAPSSSITLGKITTWIMKFLIT 231
CD + R I +F I HR P ST +L F + +A +S T TTW L
Sbjct: 19 CDFRTREIGIFPSIRHRSPAST---KLFFFTMRRGIRGSASFTSKTREAATTW--SLLDE 73
Query: 230 LWNL 219
W+L
Sbjct: 74 AWSL 77
>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
Length = 225
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 505 VTVISIFCTTSIPSKTLPNTTCLPSNQGVLTVVMKN*DPFVSLPALAI 362
+T+ + C T +P TL + TC+ GVL + + + F +P + +
Sbjct: 47 ITLALVTCVTGVPYITLASVTCV---TGVLYITLASVTCFTGVPHITL 91
>SB_28367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 598 STLFGDTERFSYNFSFRVRYNNIFDWAIIRPVTVISI 488
S LF + E + F+ RY IFDW+ I PV ++I
Sbjct: 46 SKLFQENEEWRVMFAKMKRYEVIFDWSEI-PVADVTI 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,701,673
Number of Sequences: 59808
Number of extensions: 427494
Number of successful extensions: 852
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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