Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    42   0.019
UniRef50_Q9C0V5 Cluster: Uncharacterized protein PB7E8.01 precur...    34   3.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 41.5 bits (93), Expect = 0.019
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +2

Query: 14   IWRELNGRKRPGSAPGIAEVHG 79
            +WR L+GR+R GSAPGIAEVHG
Sbjct: 963  LWRVLSGRQRLGSAPGIAEVHG 984


>UniRef50_Q9C0V5 Cluster: Uncharacterized protein PB7E8.01
           precursor; n=1; Schizosaccharomyces pombe|Rep:
           Uncharacterized protein PB7E8.01 precursor -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 569

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 LTLIPICGFDAACPFFYLDLSYI-ITAFSLPSHILVKDANSNSHYILHLYY 268
           L + P  G D   PF YLD SY+  ++ S  SH+ +   +   ++++  +Y
Sbjct: 368 LVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNFLMRAFY 418


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,886,863
Number of Sequences: 1657284
Number of extensions: 12584806
Number of successful extensions: 25837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25835
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)