Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.4  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   9.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.4  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 308 VLCTEKSFTFFCNNNIN 258
           +LCTEK F F    N++
Sbjct: 75  LLCTEKIFLFAIYTNLS 91


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 497 IILHLMYSNNNENLEYLTA*CYNI 568
           ++ +L Y+N N    +L   C N+
Sbjct: 42  LLTNLTYNNTNRKYYWLNVCCLNL 65


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 147 TLHVLFFI*IYH 182
           T+H+LF + IYH
Sbjct: 157 TVHLLFLLCIYH 168



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 TLHVLFFI*IYHTSSLHSVFPHTFSLRT 230
           T+H+L  + IY+   +H +F   F + T
Sbjct: 249 TVHLLLLVCIYYFYYMHLLFCCAFIIFT 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,164
Number of Sequences: 336
Number of extensions: 3384
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)