Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    34   0.022
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    28   1.1  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   4.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   6.5  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   7.7  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 LTLIPICGFDAACPFFYLDLSYI-ITAFSLPSHILVKDANSNSHYILHLYY 268
           L + P  G D   PF YLD SY+  ++ S  SH+ +   +   ++++  +Y
Sbjct: 368 LVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNFLMRAFY 418


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 133 WDKGKKKIFFMALVGRGEPMDFSNA 59
           +D+ K  +FF+A  G GEP D + A
Sbjct: 99  FDRSKLLVFFLATYGEGEPTDNAEA 123


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 148 VEPTYWDKGKKKIFFMALVGRGE 80
           V+ TYW   +K++FF A+   G+
Sbjct: 69  VDGTYWSAEEKELFFQAVARNGK 91


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 80  LSSAYKGHKKYLFLTLIPICGFDAACPFFYLD--LSYIITAFSLPS 211
           +SS     + Y+FL L+P+    AAC     D  L+ + T+ SL S
Sbjct: 221 ISSPEFWERTYMFLELLPLQSITAACESILKDYLLNLVKTSESLSS 266


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 173  DLSYIITAFSLPSHILVKDANSNSHYILHL 262
            D+S  +T    PSH LV+  NS+  Y  H+
Sbjct: 1910 DISLNMTPNFKPSHELVQLINSSPFYRKHI 1939



 Score = 20.6 bits (41), Expect(2) = 6.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 44   PGSAPGIAEVHGLSSAYKGH 103
            P +AP +AE  G +   K H
Sbjct: 1889 PHAAPSLAEAFGQAPENKAH 1908


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 154 CSVEPTYWDKGK 119
           C+ +PT+WDKG+
Sbjct: 157 CNKDPTWWDKGE 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,016
Number of Sequences: 5004
Number of extensions: 56771
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)