Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z54237-8|CAE52902.1|  771|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z54235-10|CAE52905.1|  771|Caenorhabditis elegans Hypothetical p...    29   3.1  
AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    29   3.1  

>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
            T11B7.4d protein.
          Length = 1424

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 183  TSSLHSVFPHTFSLRTPTPTHXXXXXXXXXAKKRKTLLGT 302
            T SLH V    +SLR PTPT          A+  +  L +
Sbjct: 1134 TQSLHDVLDEFYSLRKPTPTQNVAQSSDTTAEDSRNFLAS 1173


>Z54237-8|CAE52902.1|  771|Caenorhabditis elegans Hypothetical
           protein T11B7.4c protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 183 TSSLHSVFPHTFSLRTPTPTHXXXXXXXXXAKKRKTLLGT 302
           T SLH V    +SLR PTPT          A+  +  L +
Sbjct: 481 TQSLHDVLDEFYSLRKPTPTQNVAQSSDTTAEDSRNFLAS 520


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
            protein T11B7.4d protein.
          Length = 1424

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 183  TSSLHSVFPHTFSLRTPTPTHXXXXXXXXXAKKRKTLLGT 302
            T SLH V    +SLR PTPT          A+  +  L +
Sbjct: 1134 TQSLHDVLDEFYSLRKPTPTQNVAQSSDTTAEDSRNFLAS 1173


>Z54235-10|CAE52905.1|  771|Caenorhabditis elegans Hypothetical
           protein T11B7.4c protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 183 TSSLHSVFPHTFSLRTPTPTHXXXXXXXXXAKKRKTLLGT 302
           T SLH V    +SLR PTPT          A+  +  L +
Sbjct: 481 TQSLHDVLDEFYSLRKPTPTQNVAQSSDTTAEDSRNFLAS 520


>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 PFFYLDLSYIITAFSLPSHI 217
           PF Y    YII+AFSLP HI
Sbjct: 9   PFVYSMCFYIISAFSLPIHI 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,291
Number of Sequences: 27780
Number of extensions: 308697
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)