Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.89 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 290 SFTFFCNNNINEEYNVSWSWRP*RE 216
           SFT   NN I E Y ++  ++P RE
Sbjct: 576 SFTRIANNTIQELYTLNNMYKPTRE 600


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYNVSWSW 231
           E S  P+++ +  + T   NNN    YN  +++
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNKYNY 106


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYN 101


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 74  ERSREPKIISSLSNRTIHNNNNYKYNYN 101


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYN 101


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYN 101


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYN 101


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 329 ECSERPRVLCTEKSFTFFCNNNINEEYN 246
           E S  P+++ +  + T   NNN    YN
Sbjct: 307 ERSREPKIISSLSNKTIHNNNNYKYNYN 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,072
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)