Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30379
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16850.1 68417.m02545 expressed protein                             30   1.2  
At5g38270.1 68418.m04613 F-box family protein contains F-box dom...    29   3.8  
At4g35640.1 68417.m05061 serine O-acetyltransferase, putative si...    27   8.8  

>At4g16850.1 68417.m02545 expressed protein
          Length = 313

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = +2

Query: 38  KRPGSAPGIAEVHGLSSAYKGHKKYLFLTLIPICGFDAACPFFYLDLSYIITAFSLPSHI 217
           KRPGS+  I      S       K++   L+PI  F  A P   L LS  +T+F L +H+
Sbjct: 5   KRPGSSTRITTTLLDSFMILFRNKHI---LLPIFAF-IAIPLAALHLSLTLTSFRLKNHV 60

Query: 218 LVKDANSNSHYILHLYYYCKKT*NSSR 298
              +A +N   ++H  +  ++    SR
Sbjct: 61  FRLEALAN---VVHTRFEARQIWQESR 84


>At5g38270.1 68418.m04613 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 567 YYEYPFDFLVLTGQIVSKLSVRVIKFGQPGVIFSL 671
           Y+E+PF +L   G+ ++K  + + K G   +I S+
Sbjct: 262 YWEHPFRYLTKKGEYINKRRIAIQKSGDVLIILSV 296


>At4g35640.1 68417.m05061 serine O-acetyltransferase, putative
           similar to serine acetyltransferase, Arabidopsis
           thaliana, GI:905391; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 355

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 154 MSFFLFRSIIHHHCIQSSLTHSR*GRQLQLTLYSSFILLLQKNVKLF--SVQRTLGLSLH 327
           +S FL+ SI+ H C++ +L+     R    TL ++ ++ +  NV +    +Q ++ L + 
Sbjct: 91  LSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFCNVMVHDRGIQSSIRLDVQ 150

Query: 328 SMNKKARSLNSY 363
           +   +  +  SY
Sbjct: 151 AFKDRDPACLSY 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,561
Number of Sequences: 28952
Number of extensions: 275135
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)