Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30378
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 31 0.90
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 31 1.2
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 30 2.1
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 30 2.1
02_01_0642 - 4803464-4805665,4806231-4806320 30 2.1
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 29 3.6
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 3.6
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 29 3.6
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713... 29 4.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 4.8
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 6.3
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 6.3
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 28 6.3
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 8.4
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 28 8.4
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 8.4
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 28 8.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 8.4
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +2
Query: 53 SLQSKLQDKEEHLRNLQEKYADVINQLEI-LRSEIEDEK 166
+L++K + KE+ +NLQEK ++ +QL+ + S+I EK
Sbjct: 738 NLENKAKGKEQFYKNLQEKVKELESQLDSKMHSQITSEK 776
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 2 SSTQEETHKIVTME-QVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
S + H +T E Q L KL++KEE LQ+K A+ L+ + E E
Sbjct: 762 SQLDSKMHSQITSEKQQNELFGKLKEKEEMCTTLQQKIAEESEHKLRLQQQSESE 816
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 2 SSTQEETHKIVTME-QVTSLQSKLQDKEEHLRNLQEKYADVINQL 133
S E HK+ +E + SLQ +LQ+ E R Q+K ++ NQ+
Sbjct: 457 SRAMELEHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQV 501
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 364 AEAKVLELTHQLELKDSEIYQKTHEYTITLTQRNDEFENVRQQLVEYESASKI 522
AEAK L+ QL + S T E +T +EFE++ +++ E E S++
Sbjct: 516 AEAKALDQIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEM 568
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
Frame = +2
Query: 5 STQEETHKIVTMEQVTSL-QSKLQDKEEHLRNLQEKYADVINQLEILRS-------EIED 160
S +E T K+V E+ SL +++L+ E ++L+ + A++ N++++L+S E++D
Sbjct: 820 SLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAELENEIKVLQSKIEVLTAELDD 879
Query: 161 EK 166
E+
Sbjct: 880 ER 881
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEK 109
+Q+ ++++LQDKE+H++ LQ K
Sbjct: 516 DQLVQVRTELQDKEQHIQTLQNK 538
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 EETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED-EKVA 172
E K TS L++K+E ++NL+E+ +++ Q + ++S++++ KVA
Sbjct: 343 ENELKFPASASCTSHAEILREKDELIKNLEEQLKELMEQKDTVQSQLDNFRKVA 396
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
QEE + +Q+ + + L+ ++ + +LQEKY + L ++E
Sbjct: 424 QEENERKAMADQIEQMTTSLEANQKQINDLQEKYDSELQHSADLSKKLE 472
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 47 VTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
V+ LQS L+DK + L + K +++++ L+ E+E
Sbjct: 838 VSELQSTLEDKSKRLDETESKLNALVDEVNSLKKELE 874
>08_02_1328 +
26170248-26170493,26170702-26170798,26171325-26171342,
26171566-26171666,26173486-26173562,26173736-26173802,
26176467-26176577,26176652-26176749,26176834-26176903
Length = 294
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 361 DAEAKVLELTHQLELKDSEIYQKTHEYTITLTQRNDEFENVRQQLVEYESASKI*LMKKS 540
D + V + Q E +D + Y N+EF+N++++L+ +E +S + L K+
Sbjct: 60 DQQGGVQQQQQQEENEDGVVDSNAFYYDKKAVMSNEEFDNLKEELM-WEGSSVVMLRKRE 118
Query: 541 PN*P 552
+ P
Sbjct: 119 NDCP 122
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 355 VNDAEAKVLELTHQLELKDSEIYQKTHEYTITLTQRNDEFENVRQQLVEYES 510
+ + ++ LEL E K++E+ + HE T+ +++ E +++ ++L ES
Sbjct: 1128 LTEVHSRGLELHATAESKNAELEAQMHEALETIGKKDSEVKDLNERLAALES 1179
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKV 169
+++ I +E+ L+SKL+D + Q+KYA + + ++L E+ D K+
Sbjct: 267 EQKNECIAQLEENNLLRSKLKDLADQYNITQQKYAHQLKE-KMLELELADLKM 318
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
E V+SLQ K++ ++ L + Q+K AD IL + + D +
Sbjct: 1766 EMVSSLQDKIRHMDQMLEHEQQKCADASISTLILENSLVDAR 1807
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQ-VTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKVA 172
S ++ +VT E+ L+++LQD++ N Q+K + L ++ E+E EK A
Sbjct: 403 SKLEDTRENLVTSEKKARELEAQLQDEQLVSANNQKKSDKLEMDLRKVKKELEHEKAA 460
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 47 VTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEI 154
VTS S ++ + L+ K+ ++ N+LE+L SEI
Sbjct: 3158 VTSAASAFDAAKDIMEALRSKHTNLANELEVLLSEI 3193
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 65 KLQDKEEHLRNLQEKYADVINQLEILRSE 151
K++ +E+LR L+EK A+V ++ ++LR +
Sbjct: 1563 KMRQFQEYLRRLEEKLANVESENKVLRQQ 1591
>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 14 EETHKIVTMEQVTSLQSKLQDKEEHLR 94
E+ I+T+++++ LQ ++DKE H+R
Sbjct: 1112 EKLSSILTLKELSDLQEVMRDKELHIR 1138
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/34 (23%), Positives = 23/34 (67%)
Frame = +2
Query: 26 KIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVIN 127
K+ ++ + + +++KEEHL+N++ +D+++
Sbjct: 558 KLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILS 591
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 38 MEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
+EQ S S L+ E LR EK + + QLE RS+++DE
Sbjct: 854 LEQKQSQVSALEQANEELR---EKISSLERQLEEARSKLQDE 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,176
Number of Sequences: 37544
Number of extensions: 217518
Number of successful extensions: 654
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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