Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30378
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53259| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36) 33 0.17
SB_58853| Best HMM Match : SNF (HMM E-Value=0) 33 0.30
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 32 0.52
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 31 0.69
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 31 0.69
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 30 1.6
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 30 1.6
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19) 30 1.6
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024) 29 2.8
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.7
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 3.7
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 4.9
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 4.9
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 29 4.9
SB_27508| Best HMM Match : Cgr1 (HMM E-Value=1) 29 4.9
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 29 4.9
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_924| Best HMM Match : SNF (HMM E-Value=0.14) 29 4.9
SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013) 28 6.5
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 28 6.5
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 6.5
SB_7056| Best HMM Match : Seryl_tRNA_N (HMM E-Value=8.1) 28 6.5
SB_24737| Best HMM Match : KID (HMM E-Value=0.096) 28 8.5
>SB_53259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
+EE T+E+ L+ KL D E+ RN ++KY V+ ++ L +E+++EK
Sbjct: 137 EEEERSKKTLEECKKLEMKLADCEKEKRNFEKKYNQVVGKVGKLVNELKEEK 188
>SB_1759| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-36)
Length = 401
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -3
Query: 594 LIRIQIFMHFQSVEWLIRTLFHKSNLRCAFILHKLLSNIFELIISLRQCYGIFMSFLINF 415
L+ + I++ F+ +EW +RT F S C F+ I ++L G + F I +
Sbjct: 75 LVMLTIYLPFE-IEWHVRTFFKHSATVCDFVYTLFFITISSSCLNLMAVSG-YRFFTIAY 132
Query: 414 TIF*FKLMGKFQYFCFGII 358
+ K+ ++C II
Sbjct: 133 PFWSKKITKTHVFYCIAII 151
>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
Length = 905
Score = 32.7 bits (71), Expect = 0.30
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -1
Query: 122 LHPHIFLVNFANVLLCLVVYFAMKLLVPW*LFYEF 18
+HP++ V +A+V++CL+V +++ W +Y F
Sbjct: 175 IHPYLGGVGYASVIVCLLVGMYYNMIIAWCFYYLF 209
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 388 THQLELKDSEIYQKTHEYTITLTQRNDEFENVRQQLVEY 504
TH ELK S IY K +IT +NDE E + +VEY
Sbjct: 2326 THH-ELKSSLIYSKGKRVSITNIFKNDEAEMAKNIIVEY 2363
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 31.9 bits (69), Expect = 0.52
Identities = 22/97 (22%), Positives = 45/97 (46%)
Frame = +1
Query: 232 DRESKL*TMQEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLELKD 411
D + KL T E+ +N +E A L+ S + + K T ++
Sbjct: 383 DAKKKLDTEFEELSKNNSEREAVLR-SLQQEKNKKDIDLMTLKEKLRKSKAETEAAKMSC 441
Query: 412 SEIYQKTHEYTITLTQRNDEFENVRQQLVEYESASKI 522
S + + +EYT ++ Q ++ ++QQ+ EY+S+ ++
Sbjct: 442 STLSDQMNEYTKSVAQNGEDMLGIQQQIEEYQSSCEL 478
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 QEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLE--LKDSEIYQKT 432
Q++ I+ ++ E +++ SS ++N AK QLE +K+ + Y+K
Sbjct: 795 QKEKIEGMSRELVEMQNSSQKVTA-------KMNSFAAKAQSFEKQLEAAVKEKDRYKKE 847
Query: 433 HEYTITLTQRNDEFENVRQQLVE 501
+ ++ QRN E + Q LV+
Sbjct: 848 LDTSLEKVQRNKEETLMAQSLVQ 870
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = +2
Query: 11 QEETHKIVTME--------QVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
QE HK+ +E + L+ LQ++EE + L+E++ + +L+ +R E+E
Sbjct: 1342 QELLHKVTYLEGELKERSVETEKLKQTLQEREEQIERLKEEFQEKSRELDKMRKEVE 1398
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED 160
Q+E K + ME V+ + KLQ+ E +R+LQE+ ++ +QL + +++++
Sbjct: 536 QDEQGKKLKME-VSMTRQKLQEAEAKIRSLQEECKNLESQLNMANTDLKN 584
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 17 ETHKIVTMEQVTSLQSKLQDKEE---HLRNLQEKYADVINQLEILRSEIED 160
E KI +++ L+ +LQD E+ LQ+KY + + E LR+E +D
Sbjct: 220 EKEKIEIFDELNKLEERLQDLEDLQAQRFELQKKYDSLKEKYETLRAENDD 270
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 355 VNDAEAKVLELTHQLELKDSEIYQKTHEYTITLTQRNDEFEN 480
+ D E +V+ LTH++ELK + + + E L R +E EN
Sbjct: 1029 IEDLEKEVIILTHEIELKTARLNESKKE-NENLKNRINELEN 1069
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKVA 172
EQ+ L+ +KEE L L ++ D LE R EIED K A
Sbjct: 860 EQLDKLKKDADNKEEQLNALGKESEDKNKLLEAARLEIEDLKSA 903
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 17 ETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
+ H+ + ++ LQS LQ K+ H++NLQ ++ E L +EI D++
Sbjct: 223 KAHQSDQQQHISVLQSSLQAKDHHIKNLQ-------SECETLHTEIGDKE 265
>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
Length = 493
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +2
Query: 38 MEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
M++ T LQS++ + EE + NL+ K ++ +L + + + + +
Sbjct: 1 MKENTELQSRVDEDEEDIENLETKNRQLLKELSLSKDMLREHQ 43
>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
Length = 324
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 32 VTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILR 145
V EQVTSLQ LQ + L LQ+++A L +R
Sbjct: 134 VLSEQVTSLQDSLQHRLVELSALQQQHARAKEDLSAIR 171
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVI---NQLEILRSEIE 157
+QV L+ K+Q EE + L EK DV +++++ +SE+E
Sbjct: 244 KQVEELEKKIQQLEEKEKQLMEKNKDVNETKSKMDVAKSELE 285
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 8 TQEETHKIVTMEQVTSLQSKLQD-KEEHLRNLQEKYADVINQLEILRSEIEDE 163
T++E ++ + + Q +L+D K +HL+ L + +++ L+SE+E +
Sbjct: 837 TEKEKYEALQQQLQARQQEELEDLKAQHLKELDNLKEGITPEIDALKSELEKQ 889
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 44 QVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
Q+T Q DK+ L L+ + D+ +LE L+ E EK
Sbjct: 2386 QITKFQRDTFDKDNRLTTLEIEKIDIEKKLESLKDEYSGEK 2426
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = +1
Query: 241 SKL*TMQEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLELKDSEI 420
+K+ T Q+ S +E LK+ + AE K E ++LKD ++
Sbjct: 787 AKMKTQQKSSDSAAAKEKRLLKQQLKEKEFEINKLNENLEKAERKQKEYEDLIQLKDVDV 846
Query: 421 YQKTHEYTITLTQRNDEFENVRQQLVEYES 510
+ E L + FE + EYE+
Sbjct: 847 RKAAEEKEGMLKAMREAFEVASTKKTEYEN 876
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 397 LELKDSEIYQKTHEYTITLTQRNDEFENVRQQLVEYESASK 519
LELK + ++ E ++TQRN+E + +QL E E A K
Sbjct: 182 LELKMTSQQEQWDELYESVTQRNNEIQERLKQLEEEEEARK 222
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 26 KIVTM-EQVTSLQ---SKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
+IVT+ E+V S Q S+L++K EH R L + D + ++ +EIE++
Sbjct: 2557 RIVTLREEVVSYQKRISELEEKYEHARELNVELEDELTVVQHRITEIEND 2606
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 8 TQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSE 151
TQ+E HK+ T + V ++ L+ E++L+ + ++ N L +S+
Sbjct: 212 TQDELHKLDTCKLVDEFKANLKSMEDYLKAINHTFSS-CNMLNSFKSK 258
>SB_27508| Best HMM Match : Cgr1 (HMM E-Value=1)
Length = 229
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = +1
Query: 241 SKL*TMQEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLELKDSEI 420
+K+ T Q+ S +E LK+ + AE K E ++LKD ++
Sbjct: 33 AKMKTQQKSSDSAAAKEKRLLKQQLKEKEFEINKLNENLEKAERKQKEYEDLIQLKDVDV 92
Query: 421 YQKTHEYTITLTQRNDEFENVRQQLVEYES 510
+ E L + FE + EYE+
Sbjct: 93 RKAAEEKEGMLKAMREAFEVASTKKTEYEN 122
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 11 QEETHKIVTMEQVT-SLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED 160
Q+ K+ +E L +KLQ+ EE L Q K A L SE+ED
Sbjct: 1413 QDALAKVEELEDAKRKLAAKLQEMEEALNTAQTKAASAEKTRSRLNSELED 1463
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = +1
Query: 241 SKL*TMQEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLELKDSEI 420
+K+ T Q+ S +E LK+ + AE K E ++LKD ++
Sbjct: 806 AKMKTQQKSSDSAAAKEKRLLKQQLKEKEFEINKLNENLEKAERKQKEYEDLIQLKDVDV 865
Query: 421 YQKTHEYTITLTQRNDEFENVRQQLVEYES 510
+ E L + FE + EYE+
Sbjct: 866 RKAAEEKEGMLKAMREAFEVASTKKTEYEN 895
>SB_924| Best HMM Match : SNF (HMM E-Value=0.14)
Length = 429
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -1
Query: 110 IFLVNFANVLLCLVVYFAMKLLVPW*LFYEFLLVLM 3
+ + FA VLL LV FAM LLV F LLVL+
Sbjct: 126 VLVTTFAMVLLVLVTTFAMVLLVLVTTFTMVLLVLV 161
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 110 IFLVNFANVLLCLVVYFAMKLLVPW*LFYEFLLVLM 3
+F+ F VLL LV F M LLV +F LLVL+
Sbjct: 192 VFVTIFTMVLLVLVTTFTMVLLVLVTIFTMVLLVLV 227
>SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)
Length = 898
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 14 EETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYA---DVINQLEI 139
EE V ++Q+T ++ + EH R +++KYA VIN++ I
Sbjct: 603 EELSGDVKLQQITLIKGNINKALEHHRQVRKKYAKSRSVINKIAI 647
>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 14 EETHKIVTMEQVTSLQSKLQDK---EEHLRNLQEKYADVINQLEILRSEIEDEK 166
EE K+ ++ + L ++ DK EE + +EK +++ Q+E + ++E+E+
Sbjct: 249 EEQRKVESLHLLKELLKRVADKRAEEEEEKRKREKELEMLRQIEEKKRKLEEEE 302
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 35 TMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
T E+V L+ L +KEE LRN Q+ + + +L E E
Sbjct: 402 TTERVDHLEDVLANKEEALRNSQDAHEQTVAKLSSAIKERE 442
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
+Q+ LQSK++ ++E L +E V LE E+E+ K
Sbjct: 493 KQIQELQSKIRQQQEQLEQQREITDTVSTDLEEKAKELEEAK 534
>SB_7056| Best HMM Match : Seryl_tRNA_N (HMM E-Value=8.1)
Length = 94
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKY 112
S Q + K++ M+Q +Q+ + KE+ LR +QE+Y
Sbjct: 42 SELQAQEDKVLNMKQ--QVQAGTEKKEQELREVQERY 76
>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
Length = 636
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = +1
Query: 241 SKL*TMQEQSIQNINEENAQLKKSSXXXXXXXXXXXXRVNDAEAKVLELTHQLELKDSEI 420
+K+ T Q+ S +E LK+ + AE K E ++LKD ++
Sbjct: 348 AKMKTQQKSSDSAAAKEKRLLKQQLKEKEFEINKLNENLEKAERKQKEYEDLIQLKDVDV 407
Query: 421 YQKTHEYTITLTQRNDEFENVRQQLVEYES 510
Q + L + FE + EYE+
Sbjct: 408 RQAAEKKEGMLKAMREAFEVASTKKPEYEN 437
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,554,586
Number of Sequences: 59808
Number of extensions: 271724
Number of successful extensions: 1072
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -