Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30378
         (707 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974165-1|ABJ52805.1|  482|Anopheles gambiae serpin 5 protein.        24   4.1  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   5.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   9.4  

>DQ974165-1|ABJ52805.1|  482|Anopheles gambiae serpin 5 protein.
          Length = 482

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 467 MSSKMLDSNLWSMKAHRRFDL*KRVRISHSTD*K 568
           +SS  LD  +W MK H+      R+  S++ D K
Sbjct: 345 LSSAELDRLIWQMKMHKAIVQFPRMHASNTYDLK 378


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 14   EETHKIVTMEQVTSLQSKLQDKEEHLRNL---QEKYADVINQLEILRSEIEDEKVAF 175
            +E+ +I ++EQ   L+ K+   E+ +R +   Q+K  DV+ +LE    E  DE + +
Sbjct: 901  DESEQIPSVEQ---LKGKIHTTEKRIRLVSATQDKLEDVVEELEGKNRE-RDELIRY 953


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 472 THHFFASMLWYIHEFFDKFHYLLIQVDG 389
           TH FF   L    E   K H+LL  V G
Sbjct: 709 THTFFMDDLKLFAETVQKMHHLLKNVQG 736


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 5   STQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED 160
           +T  ++H++  + +V   +   + KEE +  L+E    +    E LR+ IED
Sbjct: 148 ATAPDSHRLKLLREVAGTRVYDERKEESMNLLRESEGKLEKISEYLRT-IED 198


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,122
Number of Sequences: 2352
Number of extensions: 9699
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)