Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30378
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.70 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 506 SYSTSCCLTFSNSSFLCVNVM 444
           +Y+T C + +S  +F C+ ++
Sbjct: 186 NYTTDCTIEYSTGNFTCIQIV 206


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 80  EEHLRNLQEKYADVINQLEILRSEIED 160
           +++ RN+ EKY ++ N    L SE +D
Sbjct: 109 DDNFRNISEKYQEIFNGY-FLNSESKD 134


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 2   SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYA 115
           SST  E  +    +  TSL+++ ++K EH    +E YA
Sbjct: 756 SSTSSEESR--EEKATTSLEAEKREKSEHCEKGKEYYA 791


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 110 IFLVNFANVLLCLVVYFAMKLLVPW*LF 27
           + L+NF   ++CL+V  A+  ++ +  F
Sbjct: 392 LVLLNFGWQMICLIVVIALVSIIMYIAF 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,099
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)