Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30378
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38150.1 68418.m04598 expressed protein 32 0.32
At2g36200.1 68415.m04444 kinesin motor protein-related 32 0.32
At2g22610.1 68415.m02680 kinesin motor protein-related 31 0.57
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 31 0.75
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 30 1.3
At2g05400.1 68415.m00568 meprin and TRAF homology domain-contain... 29 2.3
At1g19100.1 68414.m02376 ATP-binding region, ATPase-like domain-... 29 3.0
At3g57780.1 68416.m06436 expressed protein 29 4.0
At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyo... 29 4.0
At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyo... 29 4.0
At5g08120.1 68418.m00947 myosin heavy chain-related identical to... 28 5.3
At4g09060.1 68417.m01493 expressed protein 28 5.3
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r... 28 5.3
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 7.0
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 9.2
At5g41140.1 68418.m05001 expressed protein 27 9.2
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 27 9.2
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 27 9.2
At4g32190.1 68417.m04581 centromeric protein-related low similar... 27 9.2
At3g25680.1 68416.m03196 expressed protein 27 9.2
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 9.2
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 27 9.2
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/56 (21%), Positives = 33/56 (58%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKV 169
S ++ ++ + + ++ + Q+K+ + ++EKYA+V+ LE+++ E+ K+
Sbjct: 57 SEVKKSVEELALLIKRSNRSAGFQEKDMEVLKMEEKYAEVMRVLEVVKEEVSRVKL 112
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
QEE+ + V EQ+ + ++++ ++ L LQ+KY + + L ++++
Sbjct: 407 QEESERKVMAEQIEQMGGQIENYQKQLEELQDKYVGQVRECSDLTTKLD 455
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
S +++E+ K + E + +L+ K + ++ R+LQEK D+ NQL+ + ++ E +
Sbjct: 777 SRSKDESIKKME-ENIQNLEGKNKGRDNSYRSLQEKNKDLQNQLDSVHNQSEKQ 829
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED 160
SS E+ + T +Q L K L NLQ+K AD+ N LE RS +E+
Sbjct: 706 SSRIEDQLRFCT-DQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEE 757
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRN-LQEKYADVINQLEILRSEIEDE 163
+E H +E+ T Q LQ+K + N + K ADV LEI SE+ D+
Sbjct: 664 RELDHYKEMLEESTKTQLLLQEKVVDVENDSKRKLADVSEALEIANSELSDK 715
>At2g05400.1 68415.m00568 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein supported by
tandem duplication of meprin and TRAF homology (MATH)
domain protein (GI:4914358) (TIGR_Ath1:At2g05420)
[Arabidopsis thaliana]
Length = 194
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/31 (32%), Positives = 24/31 (77%)
Frame = +2
Query: 62 SKLQDKEEHLRNLQEKYADVINQLEILRSEI 154
+++QD +EH++ L++KY D+ Q++ ++E+
Sbjct: 149 AEIQDMDEHVKPLKKKYLDLEAQIDKKKAEL 179
>At1g19100.1 68414.m02376 ATP-binding region, ATPase-like
domain-containing protein-related low similarity to
microrchidia [Homo sapiens] GI:5410257; contains
non-consensus splice site (GC) at intron 8
Length = 663
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIE 157
+S ++ + ME+ L++K D++ +NL+ K ++ ++LE +SE E
Sbjct: 590 ASQSQDIETVKLMEENKKLRAKCLDRKVRSQNLEVKAMNLRSELENYKSEYE 641
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 5 STQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
+T+EE++ V ++ T+ QSKL D ++H N + + + L + EDE+
Sbjct: 42 ATKEESNVSVVVDDTTT-QSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEE 94
>At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 STQEETHKIVTME-QVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
S +E K+V E ++ L+++L D E+ +L ++ + NQL SEI + K
Sbjct: 157 SGNDEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVK 211
>At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 STQEETHKIVTME-QVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEK 166
S +E K+V E ++ L+++L D E+ +L ++ + NQL SEI + K
Sbjct: 157 SGNDEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVK 211
>At5g08120.1 68418.m00947 myosin heavy chain-related identical to
myosin heavy chain-like protein GI:1732515 from
[Arabidopsis thaliana]
Length = 326
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLE 136
EQV LQ+KL +KEE L+++ E + +N+++
Sbjct: 144 EQVNDLQTKLSEKEEVLKSM-EMSKNQVNEIQ 174
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 23 HKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLE 136
H + + SLQ KL EE R L+E+Y +I++L+
Sbjct: 33 HSLGLPISMESLQKKLYTAEESQRRLREQYQGLISRLK 70
>At3g45850.1 68416.m04962 kinesin motor protein-related
kinesin-related protein TKRP125, Nicotiana tabacum,
PIR:T02017
Length = 1058
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 11 QEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
QEE K E++ L+ + + K++ + +LQE Y N +IL +E+ ++
Sbjct: 438 QEEAEKKAMAEKIERLELQSESKDKRVVDLQELY----NSQQILTAELSEK 484
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 20 THKIVTMEQV-TSLQSKLQDKEEHL----RNLQEKYADVINQLEILRSEIEDE 163
T K+ E T L+S+++ + + ++L E++ DV +QLE +RSE +DE
Sbjct: 1378 TQKLSESEAANTRLKSEMKAEADRFSREKKDLVEQFRDVESQLEWIRSERQDE 1430
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKVA 172
+++T SKL +KE+ L +E +++ +E L+ +++ A
Sbjct: 308 QEMTRESSKLNNKEDTLLGEKENVEKIVHSIEDLKKSVKERAAA 351
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 41 EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIED 160
+QV ++S+L+ KEE + NL+ + A N + + ED
Sbjct: 809 KQVVQVRSELEKKEEEMANLENREASADNITKTEQRSNED 848
>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
ZF-HD homeobox protein-related predicted proteins,
Arabidopsis thaliana
Length = 334
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 174 LKINFLNSKKNTKNRLKILGQRIKAINNAG 263
LK+ ++++ KNT NR I G I+ I+N G
Sbjct: 248 LKV-WMHNNKNTFNRRDIAGNEIRQIDNGG 276
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 2 SSTQEETHKIVTMEQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDEKVA 172
S +EET + V SLQ K D ++ + + +++ +V +E SE+ KVA
Sbjct: 425 SKVKEETSETVVTNIEISLQEKTTDIQKAVASAKKELEEVNANVEKATSEVNCLKVA 481
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 11 QEETHKIVTM-EQVTSLQSKLQDKEEHLRNLQEKYADVINQLEILRSEIEDE 163
+E HK+ E+ +LQS L KEE L ++++ A+ ++ + SE E +
Sbjct: 185 EELKHKLRERDEERAALQSSLTLKEEELEKMRQEIANRSKEVSMAISEFESK 236
>At3g25680.1 68416.m03196 expressed protein
Length = 558
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 26 KIVTMEQVTSLQSKLQDKEEHLRNLQEKYADV---INQLEILRSEIEDE 163
K V + + + LQ L D + L +L +K + + + L ILRS IEDE
Sbjct: 486 KSVYLTEHSKLQEMLSDLQSKLESLIDKRSILEAEVEALRILRSWIEDE 534
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 385 LTHQLELKDSEIYQKTHE 438
LTH+L KD EI+QK +E
Sbjct: 410 LTHKLAAKDQEIFQKQNE 427
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 26 KIVTME-QVTSLQSKLQDKEEHLRNLQEKYADVINQL 133
K+ +E + TSL +LQD E R Q+K D NQ+
Sbjct: 446 KVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQV 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,363
Number of Sequences: 28952
Number of extensions: 199937
Number of successful extensions: 638
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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