Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30377
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.61 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 210 PTEVSISNNTSARTSQKAVCVQHTLH 133
           PT VSI+NNTS  +S  +  V    H
Sbjct: 156 PTPVSINNNTSTSSSASSPSVTAAPH 181


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 167 HRKRFVSSTRYIRG 126
           HR++FVS  R +RG
Sbjct: 193 HREQFVSLVRELRG 206


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 78  FIAFYIFLLVVEVGSRAADV 137
           F+  YIF+ V  VGS   DV
Sbjct: 365 FLLNYIFIAVGIVGSACTDV 384


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 594 FILFDYCVYFRYVLSYNY 647
           +++FDYC   R     NY
Sbjct: 502 YLMFDYCTVLRVQRFNNY 519


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,423
Number of Sequences: 336
Number of extensions: 3010
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)