Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30377
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0835 + 21636358-21636673,21637182-21637729                       28   8.5  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   8.5  

>08_02_0835 + 21636358-21636673,21637182-21637729
          Length = 287

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 246 RGSSPVSEGIIIVYFWH*FSGGQYEVRHVYMK*LLKRWTPRERRASLPASDFVTNATV 419
           RG  P+     +   +H FS   +  RHV      K W P ER   +P+S  V+++ +
Sbjct: 117 RGPIPLGRRPKLTVRFHVFSARGFVARHVSPS---KFWKPPERATLIPSSFLVSSSAL 171


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 486 GQRFSLLHRESKAINLQLVPLLTQ 415
           GQRF  + R+S A NL+L PLL +
Sbjct: 10  GQRFKRIPRQSLAGNLELDPLLNE 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,577
Number of Sequences: 37544
Number of extensions: 281640
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)