Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30377
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_11178| Best HMM Match : DUF239 (HMM E-Value=2.9)                    28   6.6  
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   8.7  

>SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 270 LHLQETTRVLYHPKGRLVLHPTEVSISN 187
           L++ +T  VL+HP  + V HP ++ I+N
Sbjct: 232 LNIDKTNFVLFHPPQKKVTHPIKLKINN 259


>SB_11178| Best HMM Match : DUF239 (HMM E-Value=2.9)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 541 MFNYDCEISNRYTIPKADWSEVF 473
           M+++ C   +R + PK DW E+F
Sbjct: 164 MWSHKCPTKSRQSTPKKDWFEIF 186


>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 284 YYYNTFTYRRRPAYYTILKVD*CCT 210
           YY  T+TY  R  ++T++K+   CT
Sbjct: 145 YYIRTYTYAERYPFHTVVKLSTGCT 169


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 270 LHLQETTRVLYHPKGRLVLHPTEVSISNNTSARTSQKAVCVQH 142
           L + +  R+L+  +G LV H     I      +  QK +CV H
Sbjct: 209 LDMTQMNRILWIDEGNLVAHIEAGIIGEELEKQLQQKGLCVGH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,357
Number of Sequences: 59808
Number of extensions: 339788
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)