Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30377
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    25   0.71 
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   5.0  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   5.0  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   5.0  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   5.0  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  

>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTILKVD 222
           S+   Y YN +    +P YY I+ ++
Sbjct: 317 SLSNNYNYNNYNNNYKPLYYNIINIE 342


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 84  SLSNNYNYNNYNNNYKPLYYNI 105


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 84  SLSNNYNYNNYNNNYKPLYYNI 105


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 84  SLSNNYNYNNYNNNYKPLYYNI 105


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 84  SLSNNYNYNNYNNNYKPLYYNI 105


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 317 SLSNNYNYNNYNNNYKPLYYNI 338


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 317 SLSNNYNYNNYNNNYKPLYYNI 338


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 317 SLSNNYNYNNYNNNYKPLYYNI 338


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 299 SMPKIYYYNTFTYRRRPAYYTI 234
           S+   Y YN +    +P YY I
Sbjct: 306 SLSNNYNYNNYNNNYKPLYYNI 327


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 347 IKTLDAKRAAGELASF*LCY*RYCVSKGTSCKLIAFD 457
           + TL   +  GELA    C     ++  T C+L A D
Sbjct: 156 LSTLAPGKVLGELAILYNCKRTATITAATDCQLWAID 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,182
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)