Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30375
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   132   6e-32
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   132   6e-32
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   132   6e-32
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    41   2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    32   0.095
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    29   0.67 
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    28   1.2  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   2.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.2  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.2  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  132 bits (318), Expect = 6e-32
 Identities = 54/72 (75%), Positives = 65/72 (90%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221

Query: 686 STVKRGTSAGPK 721
           +TV R ++ G K
Sbjct: 222 TTVPRQSAPGQK 233



 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 8e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  132 bits (318), Expect = 6e-32
 Identities = 54/72 (75%), Positives = 65/72 (90%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221

Query: 686 STVKRGTSAGPK 721
           +TV R ++ G K
Sbjct: 222 TTVPRQSAPGQK 233



 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 8e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  132 bits (318), Expect = 6e-32
 Identities = 54/72 (75%), Positives = 65/72 (90%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221

Query: 686 STVKRGTSAGPK 721
           +TV R ++ G K
Sbjct: 222 TTVPRQSAPGQK 233



 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 8e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +2

Query: 608 PYVRGVAMNPVEHPHGGGNHQHIG 679
           P VRG AMNP +HPHGGG  + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 553 RFVNTSTSSNNT-DHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 413
           RF+N +T+S++T    LLLD    +    S  +V +ASG+ P+   KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -1

Query: 565 SFQNRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 398
           SF+  + NT+T   N +  + LDGR   +P G    V     L + L  +   + P    
Sbjct: 37  SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96

Query: 397 RRPLSPIFS 371
           R+   PI S
Sbjct: 97  RQHNLPITS 105


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 542 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 634
           ++KPI        K+K K +CW  +RG   N
Sbjct: 68  VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 567 PAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVALLLYA 451
           P  K+GL+   PP  +  M         W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 618  RTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVA 466
            R Y   LR   Y+    P F+   S  P PA +  +   +    +W Q +A
Sbjct: 1211 RVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYS-AWNQCIA 1260


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 391 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 293
           P++P+F SR H   P G+  T   FP     F+
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,414
Number of Sequences: 5004
Number of extensions: 70493
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)