Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30375
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   3e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       142   3e-34
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    38   0.008
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   30   1.6  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              30   2.2  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 29   2.9  
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  142 bits (343), Expect = 3e-34
 Identities = 62/83 (74%), Positives = 73/83 (87%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN 
Sbjct: 82  MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           + KRTRVKLPSG KKV+PSSNRA
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRA 164



 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/83 (75%), Positives = 71/83 (85%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FRDPY++K RKELF+  + ++
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMY 83



 Score =  138 bits (334), Expect = 4e-33
 Identities = 60/72 (83%), Positives = 64/72 (88%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           + +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG  
Sbjct: 163 RALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHP 222

Query: 686 STVKRGTSAGPK 721
           STV+R T AG K
Sbjct: 223 STVRRDTPAGRK 234


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  142 bits (343), Expect = 3e-34
 Identities = 62/83 (74%), Positives = 73/83 (87%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN 
Sbjct: 40  MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           + KRTRVKLPSG KKV+PSSNRA
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +2

Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKALH 271
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+  + ++
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +3

Query: 300 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 479
           A L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS 
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167

Query: 480 AKKVLPS 500
            +K + S
Sbjct: 168 VEKEVSS 174


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 595 FDLVLVVCPSSFQNRFVNT--STSSNNTDHALLLDGRTFLAPDGSFT 461
           F L   V PSS QN F +   + ++  T   L+LD  TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 193 FGCCTLPRSIQVQDKEGALHCPEGS 267
           FGCC +P ++  QDK     CP GS
Sbjct: 182 FGCCVMPNAVHCQDKWHC--CPMGS 204


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 342 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 518
           P G I+  +   +GD+    R +GN  T       A  +   +PS     L + +RAWS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 342 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 518
           P G I+  +   +GD+    R +GN  T       A  +   +PS     L + +RAWS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 455 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 282
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 281 KLACV 267
              CV
Sbjct: 136 NQRCV 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,124,343
Number of Sequences: 59808
Number of extensions: 575308
Number of successful extensions: 1575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)