Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30374
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    34   0.023
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    29   0.50 
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    28   1.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   3.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 GDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTR 605
           G+G++ LWLDG L    + R   + N PL+ R
Sbjct: 139 GNGRYSLWLDGSLEYAYSSRTPAFENNPLSYR 170



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = +2

Query: 77  LPAR-AQGYMWSLAFSTSQHGFSLASMY----RKMQRVDSP---VLLVIQDTDNNVFGAM 232
           LPAR A    W   +S    G SL +MY    ++  R   P    +L ++DTD +VFG  
Sbjct: 27  LPARYASAETWKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACILAVRDTDGDVFGVF 86

Query: 233 TSCALHP 253
               L P
Sbjct: 87  IPDYLIP 93


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 304 IEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQSQTV 426
           +E+DT  GA+  V +D+S+ E  S+N    +K+  EQ + +
Sbjct: 56  LEQDTDFGANEVVGSDNSSPEKRSENSPSKRKDILEQRKNL 96


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 564 VCAPGTGLRPATDRIFHRHAD 502
           VCAPGT   PA D  F +H D
Sbjct: 172 VCAPGTIWSPAWDERFKKHPD 192


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 226 GHDVVCSTSVEHFYGTGESFLYSFQRIEEDTSPGAHGPVHADDSNKETDSDNQSDTKKED 405
           GH V+ ++   H   + +S         E    G     + D+S+++ D DN +D   ED
Sbjct: 314 GHGVMDASGNHHSGSSNQSINADSSAGSEGVDEGTSTEAN-DESSEDDDEDNNTDEANED 372

Query: 406 NEQS 417
            + +
Sbjct: 373 AQSN 376


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 343 HADDSNKETDSDNQSDTKKEDNEQSQTVK 429
           +ADD+NKE +  + SD     N   Q +K
Sbjct: 78  NADDANKEPEKQSTSDYVSRKNRHMQLIK 106


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 307 EEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQS 417
           EE+T       V +D+S  E++S+++S+ + E  E+S
Sbjct: 91  EEETESEEDSEV-SDESESESESESESEEESESEEES 126


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 FSTSQHGFSLASMYRKMQRVDSPVLLVIQ 202
           F  S HG+S+ ++ RKM    +P +L+I+
Sbjct: 302 FRASFHGYSMYALERKMCNYHNPSILLIK 330


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 78  YRLALRGTCGRSRSAPASTGSRSRPCTARCSASTAPCSSSYRTPITT 218
           YR A   T   S S+  ST   S+P T+  S S+   SSS  T + T
Sbjct: 49  YRRA--STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVIT 93


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
 Frame = +3

Query: 111 SRSAPASTGSRSRP-------CTARCSASTAPCSSSYRTPITTCLGP 230
           S S+ ++TGS S P       CT   S      SSS  TPIT  + P
Sbjct: 94  STSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,988
Number of Sequences: 5004
Number of extensions: 54306
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)