Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30374
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.13 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 363 FVRIVGVDRAVSPRARVFLNPLKRIEERFTS-TVEMFNGCRAHD 235
           F +I  VDR+ SP  R  +NP++ ++  F    V + NG +  D
Sbjct: 6   FSKISKVDRSTSPLPRKPVNPVQELKALFAEPPVRVSNGGKEQD 49


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 515 WKIRSVAGRRPVPGAHTT 568
           WK R V G +PVP   TT
Sbjct: 29  WKSRGVVGPKPVPFFGTT 46


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 647 DEGPALHDLHDEVLSRRQRLVTVRLAPL 564
           +E    H +H E LSR QR +  RL  L
Sbjct: 101 EERERKHAVHKEQLSREQRFLRRRLEQL 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 99  TCGRSRSAPASTGSRSRPCTARCSASTAPCSSSYRTPITT 218
           T G + + PA++ + + P T     +T+  +++  T  TT
Sbjct: 221 TTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTT 260


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 149 SMYRKMQRVDSPVL--LVIQDTDNNVFGAMTSCALHPLNISTVLVNRSSIRFK 301
           S YR+M++  S     L+  + DNN    +T+  L+ L  S+VLV+  + R K
Sbjct: 394 SNYREMEKRQSVPANDLLTTEKDNNEI--VTAQFLNQLKKSSVLVHTKNGRLK 444


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 SLAFSTSQHGFSLASMYRKMQRV 175
           SL FS   HG+   +M+R  ++V
Sbjct: 197 SLEFSDQIHGYRCRTMHRLTRQV 219


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 SLAFSTSQHGFSLASMYRKMQRV 175
           SL FS   HG+   +M+R  ++V
Sbjct: 197 SLEFSDQIHGYRCRTMHRLTRQV 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,178
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)