Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30374
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 52 5e-07
At2g05590.1 68415.m00594 expressed protein similar to nucleolar ... 52 5e-07
At4g39870.1 68417.m05649 expressed protein hypothetical protein,... 50 1e-06
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 33 0.25
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone... 32 0.33
At3g02930.1 68416.m00288 expressed protein ; expression support... 31 1.00
At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kina... 30 1.3
At3g01160.1 68416.m00020 expressed protein 30 1.3
At3g19750.1 68416.m02500 hypothetical protein 30 1.7
At1g35500.1 68414.m04405 hypothetical protein 30 1.7
At1g78110.1 68414.m09103 expressed protein 29 2.3
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 29 2.3
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 29 3.0
At2g40500.1 68415.m04998 protein kinase family protein contains ... 29 3.0
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 29 4.0
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 29 4.0
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 29 4.0
At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 29 4.0
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 4.0
At4g03100.1 68417.m00418 rac GTPase activating protein, putative... 28 5.3
At3g27180.1 68416.m03399 expressed protein 28 5.3
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 28 5.3
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 28 7.0
At5g11270.1 68418.m01316 expressed protein 28 7.0
At4g36980.1 68417.m05240 expressed protein 28 7.0
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 28 7.0
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 7.0
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 28 7.0
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 27 9.3
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 27 9.3
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP... 27 9.3
>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 303
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 77 LPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHP 253
LP +G W L +ST +HG SL ++ R+ + P LLV D VFGA+ C L P
Sbjct: 147 LPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQGAVFGALLECPLQP 205
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 471 FYSWEQRQYIDRRGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTF 644
+Y +++ G G F L LD DL + +T+GNE L + +F +K +E W F
Sbjct: 238 YYLMCMNEFLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGF 295
>At2g05590.1 68415.m00594 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 263
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 77 LPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHP 253
LP +G W L +ST +HG SL ++ R+ + P LLV D VFGA+ C L P
Sbjct: 147 LPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPCLLVAGDKQGAVFGALLECPLQP 205
>At4g39870.1 68417.m05649 expressed protein hypothetical protein,
Schizosaccharomyces cerevisae, Z99168
Length = 394
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +2
Query: 77 LPARAQGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHP 253
LPA QG W L +ST +HG SL+++YRK LLV+ D +VFG + L P
Sbjct: 223 LPALVQGRKWILLYSTWRHGISLSTLYRKSLLWPGLSLLVVGDRKGSVFGGLVEAPLIP 281
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +3
Query: 471 FYSWEQRQYIDRRGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 647
FY+ ++++ G G+F L+LD +L G + +TYGN L +DF VK +E W F+
Sbjct: 313 FYTLCSKEFLALGGGGRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVELWGFV 371
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 522 FGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 647
FGL++ G+T C T+G+ L+ +++ECW +
Sbjct: 344 FGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIV 385
>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1025
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 66 GAACYRLALRGTCGRSRSAPASTGSRSRPCTARCSAST 179
G++ +LA+R T +SR +T +R PC RC ST
Sbjct: 7 GSSVAKLAIRRTLSQSRCGSYATRTRVLPCQTRCFHST 44
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 30.7 bits (66), Expect = 1.00
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 349 DDSNKETDSDNQSDTKKEDNEQSQTVKTKFKYW 447
D N + + D + KKE + + +TV+ +FK W
Sbjct: 701 DGMNMKLEEDTEKKEKKERSPEDETVEVEFKMW 733
>At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 715
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 471 FYSWEQRQYIDRRGDGKFGLWLDGDLYLGRTQRCKTYG 584
FY+ + R + G GK+ LW DG +Y+G R KT G
Sbjct: 31 FYTGQWRDNLPH-GHGKY-LWTDGCMYVGDWHRGKTMG 66
>At3g01160.1 68416.m00020 expressed protein
Length = 380
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 304 IEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQSQTVKT 432
+++ P H V A +E +SD +KKE +E + TVK+
Sbjct: 300 LKQKEDPKGHEDVKAPKEKQELNSDGNLGSKKERHELTSTVKS 342
>At3g19750.1 68416.m02500 hypothetical protein
Length = 378
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 307 EEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQSQ 420
EE S G + AD+S E+D++ S + E++ +++
Sbjct: 266 EESESDGENAEAEADESTTESDAEEDSSAQSEEDSEAK 303
>At1g35500.1 68414.m04405 hypothetical protein
Length = 138
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 623 LHDEVLSRRQRLVTVRLAPLCAPQVQV 543
L DEVLS Q+L T ++ P CA V +
Sbjct: 35 LTDEVLSENQKLATQKIDPSCAVDVSI 61
>At1g78110.1 68414.m09103 expressed protein
Length = 342
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 331 HGPVHADDSNKETDSDNQSDTKKEDNEQSQTVKTKFKYW 447
H V +DD +E D D++ + E E+ + KT F W
Sbjct: 165 HADVTSDDDEEEDDDDDEEEEVVE-GEEEENSKTVFSKW 202
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 235 VVCSTSVEHFYGTGESFLYSFQRIEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQ 414
+V + V+ FY ES + + + + HG +DS+ + SD+ SD K + N +
Sbjct: 57 LVVAELVKDFYKEYESLYHQYDDLTGEIRKKVHGK-GENDSSSSSSSDSDSDKKSKRNGR 115
Query: 415 SQ 420
+
Sbjct: 116 GE 117
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 310 EDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNE 411
ED + G H V DDS + D +Q + K+E+ E
Sbjct: 127 EDVNGGEHQKVIDDDSKEVNDGSSQENGKEENKE 160
>At2g40500.1 68415.m04998 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 295
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 525 RIFHRHADRYIVVAPTNKIHVVSRPS 448
RI HR D + +V +NK H+ +PS
Sbjct: 60 RIMHRFRDHHRIVQASNKFHIQIKPS 85
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 307 EEDTSPGAHGPVHADDSNK--ETDSDNQSDTKKEDNEQSQTVKTKFK 441
EED S DDS K + D D+ D ++ED+E + +T K
Sbjct: 73 EEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKK 119
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 307 EEDTSPGAHGPVHADDSNK--ETDSDNQSDTKKEDNEQSQTVKTKFK 441
EED S DDS K + D D+ D ++ED+E + +T K
Sbjct: 156 EEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKK 202
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +1
Query: 349 DDSNKETDSDN---QSDTKKEDNEQSQTVKTK 435
D SNKET+ D+ +S+ K+E+N +T +T+
Sbjct: 458 DTSNKETEDDSSKTESEKKEENNRNGETEETQ 489
>At4g27310.1 68417.m03918 zinc finger (B-box type) family protein
zinc-finger protein S3574, Oryza sativa, PIR3:JE0113
Length = 223
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 280 SFLYSFQRIEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQSQTVKTKFKYWGWT 456
SF RI ED G + DD ++ D + D ++D+E + + + W+
Sbjct: 99 SFESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWS 157
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 510 GDGKFGLWLDGDLYLGRTQRCKTYGN 587
G GK+ LW DG +Y+G KT GN
Sbjct: 86 GHGKY-LWTDGCMYIGDWYNGKTMGN 110
>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profile PF00620:
RhoGAP domain
Length = 430
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 298 QRIEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQS 417
+R E T + P H+ +S ++DSDN D + Q+
Sbjct: 304 EREENATGSEGYSPSHSSNSQTDSDSDNAQDMEVSCESQA 343
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 439 KYWGWTGDNMYFIRGSNDNISIGVAMENS 525
+ WGW +RGS+DN IG+ E +
Sbjct: 92 RLWGWRCRAKLAVRGSSDNALIGLYQEGT 120
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 301 RIEEDTSPGAHGPVHADDSNKETDSD-NQSDTKKEDNEQSQTVKTKFKYWG 450
R EE+ G++ ++ DD+N + +D +ED + S T K++ + WG
Sbjct: 2 RKEEEEEAGSYN-MNVDDTNNNNNYICTDNDYIEEDEDNSNTKKSQTQAWG 51
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 346 ADDSNKETDSDNQSDTKKEDNEQSQTVKTKFKYWGWTG 459
AD + + D DN + E+ E KT+F W + G
Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNRKTQFFQWWYFG 176
>At5g11270.1 68418.m01316 expressed protein
Length = 354
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 334 GPVHADDSNKETDSDNQSDTKKEDNEQSQTVKTKFKYW 447
G V D N + D+D+ + +D+ + TK K W
Sbjct: 152 GDVDVDVDNDDDDNDDDDNDDDDDDSEEDERPTKLKNW 189
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 349 DDSNKETDSDNQSDTKKEDNEQSQTVKTKF--KYWGW 453
DD + D + + D+ D+E +T+ +F K +GW
Sbjct: 191 DDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGW 227
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 349 DDSNKETDSDNQSDTKKEDNEQSQTVKTKFK 441
DD +++ D +++ D + +D+E + KTK K
Sbjct: 313 DDIDEDEDEEDEEDEEDDDDEDEEESKTKKK 343
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 358 NKETDSDNQSDTKKEDNEQSQTVKTK 435
NK+ + D+ D++ +D+ +S VKTK
Sbjct: 257 NKDYEGDSTQDSRDQDDSESPPVKTK 282
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 351 VGVDRAVSPRARVFLNPLKRIEERFTSTVEMFNGC 247
VG+D R + K +EER TS++ M GC
Sbjct: 613 VGLDEMAGTSIRRLPHDEKELEERLTSSILMTGGC 647
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 298 QRIEEDTSPGAHGPVHADDSNKETDSD--NQSDTKKEDNEQSQ 420
Q++E++ S G P DDS KETD++ N D+K+E + Q
Sbjct: 119 QKLEQEKS-GTELP--DDDSKKETDNNRLNDDDSKEETDNNRQ 158
>At2g03140.1 68415.m00267 CAAX amino terminal protease family
protein very low similarity to SP|Q40863 Late
embryogenesis abundant protein EMB8 from Picea glauca;
contains Pfam profile PF02517 CAAX amino terminal
protease family protein
Length = 1805
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 298 QRIEEDTSPGAHGPVHADDSNKETDSDNQSDTKKEDNEQ 414
QR +E + + A D NK T +DN+ D K Q
Sbjct: 865 QRKDETSKSDENAKQSATDQNKVTSTDNEGDAGKSSASQ 903
>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
TBP-interacting protein TIP120 GI:1799570 from [Rattus
norvegicus]
Length = 1219
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 626 DLHDEVLSRRQRLVTVRLAPLCAPQVQVSVQPQ 528
D H + S R V ++AP AP + V++ PQ
Sbjct: 100 DQHRDTASIALRTVVAQIAPTLAPSILVTLTPQ 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,395
Number of Sequences: 28952
Number of extensions: 303165
Number of successful extensions: 1348
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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