Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9HW85 Cluster: Exodeoxyribonuclease I; n=19; Pseudomon...    34   3.0  
UniRef50_UPI00015615D9 Cluster: PREDICTED: hypothetical protein;...    33   5.2  

>UniRef50_Q9HW85 Cluster: Exodeoxyribonuclease I; n=19;
           Pseudomonas|Rep: Exodeoxyribonuclease I - Pseudomonas
           aeruginosa
          Length = 480

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -2

Query: 305 STLACFKGIVQSHPALYDYICRLRTQFHRLSQIKALKP 192
           +T+A  + I Q  P LYDY+ +LR++   L Q++ L+P
Sbjct: 184 ATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQP 221


>UniRef50_UPI00015615D9 Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 550

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSHPALYDYICR 240
           C +C KTLS+L+C +G ++ H     Y C+
Sbjct: 443 CQHCGKTLSSLSCLRGHLRMHTGERPYECQ 472


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,086,151
Number of Sequences: 1657284
Number of extensions: 9997613
Number of successful extensions: 18696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18696
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)