Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.6  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   8.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   8.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSHPALYDYICR 240
           C+ C  T    +     ++SH  +Y Y CR
Sbjct: 261 CNKCDYTCVNKSMLNSHMKSHSNVYRYSCR 290



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 129 KTSRSYVRYTTITTLATLKYCH*KSTEIQQFFSTP 25
           K+  +  RY+        KYCH     ++++  TP
Sbjct: 279 KSHSNVYRYSCRDCSYATKYCHSLKIHLRRYGHTP 313


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSHPALYDYICR 240
           C+ C  T    +     ++SH  +Y Y CR
Sbjct: 19  CNKCDYTCVNKSMLNSHMKSHSNVYRYSCR 48


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 359 NCMNAKYVRYFYIRVILVSL*KKFELFILVPNY 457
           NC+NAK +  F+ ++  +   K+F L     NY
Sbjct: 89  NCINAKQITIFFDKIQRID--KQFGLLGYSINY 119


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  LVY*KIVVFQLIFNDSILVLPV 89
           +VY  ++VF  I N ++LVL V
Sbjct: 57  IVYSILMVFSAIANTTVLVLIV 78


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  LVY*KIVVFQLIFNDSILVLPV 89
           +VY  ++VF  I N ++LVL V
Sbjct: 57  IVYSILMVFSAIANTTVLVLIV 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,392
Number of Sequences: 336
Number of extensions: 2998
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)