Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.9  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   8.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.5  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 25  WCTEKLLYFS*FSMTVF*CCQCS 93
           WC +   YFS FSM +    +CS
Sbjct: 212 WCLDDYWYFSLFSMFMIIALECS 234


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -2

Query: 317 RKTLSTLACFKGIVQSHPALYDYICRLRTQFHRLSQ-IKALKP----YTINRS 174
           R+ +    CFK + Q H  LY  +    +  + LSQ + A +     YTIN S
Sbjct: 79  REAIGICTCFKTLNQLHTKLYQQMISSGSPVYSLSQSLPAFRDVYHMYTINLS 131


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -2

Query: 314 KTLSTLACFKGIVQSHPALYDYICRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTRSR 135
           + +  +A  KG+  +HP +  Y+  ++T+ H       +  Y +N    L  Y  + R  
Sbjct: 542 RLMREVAILKGLGNNHPHIVKYLDFVKTKHH----FGIVLDY-VNGG-ELFDYILARRRL 595

Query: 134 PTKLAVRMYATPLS-LHWQH*NTVIENQLKYNN 39
              +A R++A  +S + + H   V+   LK  N
Sbjct: 596 EDSVACRLFAQLISGVAYLHSRGVVHRDLKLEN 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,015
Number of Sequences: 5004
Number of extensions: 47704
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)