Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0531 - 6934736-6935068,6935079-6935135                           28   6.5  
03_02_0448 + 8593574-8594203,8595027-8595246,8595950-8595999           27   8.7  

>04_01_0531 - 6934736-6935068,6935079-6935135
          Length = 129

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 197 KPYTINRSLMLLVYCKSTRSRPTKLAVRMYATPLSLH 87
           KP TI+ ++++ + CKS RSR   L     AT +S H
Sbjct: 4   KPLTIDENVVMRISCKSRRSRHDALV----ATTISQH 36


>03_02_0448 + 8593574-8594203,8595027-8595246,8595950-8595999
          Length = 299

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 139 DRVDLQYTSNINDRLIVYGFSA 204
           DRVDL+ T ++  +++V GFS+
Sbjct: 185 DRVDLRITGDVGAKILVLGFSS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,559
Number of Sequences: 37544
Number of extensions: 251935
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)