Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.2  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   5.1  
SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSHPALYDYICRLRTQ-FHRLSQIK 204
           CH C K  +  +  K  +++H  + +YIC +  + FH+   ++
Sbjct: 221 CHICNKAFNRSSTLKTHIRTHSEVKEYICEVCGKGFHQKGNLR 263


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 245 CRLRTQFHRLSQIKALKPYTINRSLMLLVYCKSTRSRPTKLAVRMYATPLSLHWQH*NTV 66
           CR R ++    ++ A   Y++  SL  LV+CK   +   KL  + Y   L + W      
Sbjct: 177 CRKRLKYAECLRVYAPLSYSVTCSLTFLVFCKIPTN--VKLDPKSY-NKLRISWTQPEDP 233

Query: 65  IENQLKYNN 39
            EN + Y+N
Sbjct: 234 -ENSIFYDN 241


>SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 271 D*TIPLKHASVLNVFLQ*W-QSYRSQT*MGQLYERQVCKVLLYQSNISFTVKKI*AFYPC 447
           D  IP+KH  ++++    + Q +R  T M     +  C+ L   +  +FTV+   AF+P 
Sbjct: 192 DHVIPIKHHVIIHLSRSYYKQEHRELTEMRTKLSQ--CRGLDKMTRSNFTVRTFFAFFPS 249

Query: 448 PKLLLSGI 471
           P    +GI
Sbjct: 250 PCSKCNGI 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,167,231
Number of Sequences: 59808
Number of extensions: 326033
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)