Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   4.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.0  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSHPALYDYICR 240
           CH C K  S     +G +++H     + C+
Sbjct: 45  CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQ 74



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 329 CHYCRKTLSTLACFKGIVQSH 267
           C YC K   +L   K  +++H
Sbjct: 19  CKYCEKVYVSLGALKMHIRTH 39


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 395 YKSTLHTW 372
           YKSTLH W
Sbjct: 253 YKSTLHCW 260


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 395 YKSTLHTW 372
           YKSTLH W
Sbjct: 253 YKSTLHCW 260


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 323 YCRKTLSTLACFKGIVQSHPALYDYICRLRTQFHRLSQ 210
           Y +K ++  A FKG+      + + + RL ++  RLS+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPEVMRRLMSEDKRLSK 800


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,385
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)