Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30373
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    28   4.1  
At5g57450.2 68418.m07178 DNA repair family protein contains simi...    27   7.2  
At5g57450.1 68418.m07177 DNA repair family protein contains simi...    27   7.2  
At4g35660.1 68417.m05063 expressed protein contains Pfam profile...    27   9.6  

>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 115 RTASFVGLDRVDLQYTSNINDRLIVYGFSALICDSLW 225
           +T   V  +  D     N+ D L+  G+ A IC S W
Sbjct: 130 KTTEIVEREVEDKSRLKNVVDELVALGYDAAICKSRW 166


>At5g57450.2 68418.m07178 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 305 LMFFYNSGR--VTEAKLKWVNCMNAKY 379
           L + Y+SGR  V    L W NC+N+++
Sbjct: 219 LRYLYSSGRRVVPSLGLAWANCVNSRF 245


>At5g57450.1 68418.m07177 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 305 LMFFYNSGR--VTEAKLKWVNCMNAKY 379
           L + Y+SGR  V    L W NC+N+++
Sbjct: 219 LRYLYSSGRRVVPSLGLAWANCVNSRF 245


>At4g35660.1 68417.m05063 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function;
           expression supported by MPSS
          Length = 288

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 MQAYLMFFYNSGRVTEAKLKWVNCMNAKYVRYFYIRVI 406
           +Q+ L F   SG   E K   + C++   +R F+ R+I
Sbjct: 200 LQSLLQFLSTSGENNEKKNGEIGCVDNSMIRSFFGRII 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,666
Number of Sequences: 28952
Number of extensions: 227410
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)