Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6ETL6 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_Q8II83 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  
UniRef50_Q9F3S7 Cluster: Cytochrome oxidase subunit III; n=3; Ba...    33   7.0  
UniRef50_Q5CV24 Cluster: Protein with 12 transmembrane domains; ...    33   7.0  
UniRef50_UPI00006CFD8F Cluster: Ubiquitin family protein; n=1; T...    33   9.2  
UniRef50_Q6LVL8 Cluster: Putative O-antigen ligase; n=2; Photoba...    33   9.2  

>UniRef50_A6ETL6 Cluster: Putative uncharacterized protein; n=1;
           unidentified eubacterium SCB49|Rep: Putative
           uncharacterized protein - unidentified eubacterium SCB49
          Length = 324

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 580 KTPNLERIITEHKEAHFKFNFNS*QFWS*TLLLEYFKQN 696
           K PNLE I+ E   +H +   NS  FW  T+ L+Y+  N
Sbjct: 109 KFPNLETIVFELSYSHLELPHNSKYFWKKTIYLKYYGVN 147


>UniRef50_Q8II83 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1789

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 17   PLARIQYDPPKIKYYFKNPKYSRNVFN 97
            P++     PP+I YY +NP   RNVFN
Sbjct: 1548 PISEESIAPPQIYYYLENPMKERNVFN 1574


>UniRef50_Q9F3S7 Cluster: Cytochrome oxidase subunit III; n=3;
           Bacteria|Rep: Cytochrome oxidase subunit III -
           Rhodothermus marinus (Rhodothermus obamensis)
          Length = 226

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 432 YYDTIGLLKKKISNTKMAVYLQGFFSSFKYFSRTLDFYNYIF*IENIQFEDPQL 593
           +Y  +G  K+ + N  + + L G F   KYF  +  F+++IF   N  +E  QL
Sbjct: 100 HYAQLGDKKRLVQNLWLTIALAGVFMVVKYFEYSEKFHHHIFPGGNYAYEGLQL 153


>UniRef50_Q5CV24 Cluster: Protein with 12 transmembrane domains;
           n=2; Cryptosporidium|Rep: Protein with 12 transmembrane
           domains - Cryptosporidium parvum Iowa II
          Length = 493

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 54  SIILKILNIHGMYLTLQLQWPPSWLQFKYYVSNSPFGIAVSLFLASRSHYRLLNPK-KNF 230
           +++  IL+I G  L   L +      + YY +   FGI++S   ASRS +  + PK KN 
Sbjct: 141 ALVGHILSIFGYTLMFLLHFS----SYAYYFAGICFGISLSCTFASRSRFMQMFPKVKNT 196

Query: 231 LSSVRNYGVNVC*FVIPISVSLMKEIF 311
           +  +   G++    + P+    + E+F
Sbjct: 197 VGMLLTIGMDFS-LLFPLLQDKLSELF 222


>UniRef50_UPI00006CFD8F Cluster: Ubiquitin family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Ubiquitin family
            protein - Tetrahymena thermophila SB210
          Length = 1252

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 432  YYDTIGLLKKKISNTKMAVYLQGFFSSFKYFSRTLDFYNYIF*IENIQFEDPQLGENY 605
            Y  + G    + S T   ++LQG  S+ KYF   + + N IF  ++I      L E++
Sbjct: 954  YITSDGFEIDECSETDDGIFLQGMISAIKYFCEEISYTNPIFQEQDITIYKQNLEEHF 1011


>UniRef50_Q6LVL8 Cluster: Putative O-antigen ligase; n=2;
           Photobacterium profundum|Rep: Putative O-antigen ligase
           - Photobacterium profundum (Photobacterium sp. (strain
           SS9))
          Length = 372

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -3

Query: 599 LSKLGVFKLYIFYLKNIIVKIQSATEVFERRKKTL*INSHFGIA 468
           L K G+F L +F +  I+  IQS T V ER+ + + I+S F IA
Sbjct: 294 LIKSGMFGLLLFLVLLIVPIIQSKTLVIERKHQLIGISSLFAIA 337


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,040,567
Number of Sequences: 1657284
Number of extensions: 12864018
Number of successful extensions: 25817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25814
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)