Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    30   0.38 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.7  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   6.1  

>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 189 KPKIMKQQYQKA--NY*HNI*TVTRREAIVAVRLNTFREYLGFLK 61
           KP I+KQ++Q    N  + + T T+   ++ +   T  EYL +LK
Sbjct: 116 KPWIVKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLK 160


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 72  LNIHGMYLTLQLQWPPSWLQFKYYVSNSPFGIAVSLFLA 188
           L  HG++L+L+ ++  S+ QF    SNS F I +++ L+
Sbjct: 769 LKAHGLFLSLRSEYFSSYFQFVSMESNS-FDIPITVNLS 806


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +3

Query: 462 KISNTKMAVYLQGFFSSFKYFSRTLDFYNYIF*IENIQFEDPQLGENYHR 611
           +I N  +  ++  +F   K   + LD+  YI  +++  + D +   NY +
Sbjct: 292 EIDNLSLVKFICDYFLYRKLSLKNLDYSKYITFVQDRNYNDSRYSLNYEK 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,105
Number of Sequences: 5004
Number of extensions: 59490
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)