Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110446-1|AAI10447.1|  920|Homo sapiens solute carrier family 1...    30   9.5  
BC065297-1|AAH65297.1|  747|Homo sapiens mediator complex subuni...    30   9.5  
BC044597-1|AAH44597.1|  192|Homo sapiens TMEM41B protein protein.      30   9.5  
BC035034-1|AAH35034.1|  192|Homo sapiens TMEM41B protein protein.      30   9.5  
AY533507-1|AAS45401.1|  796|Homo sapiens ARC/mediator transcript...    30   9.5  
AJ617479-1|CAE84581.1|  754|Homo sapiens activator interaction d...    30   9.5  
AF349446-1|AAL08485.1|  920|Homo sapiens urea transporter UT-A1 ...    30   9.5  
AF261072-1|AAM20739.1|  747|Homo sapiens p78 protein.                  30   9.5  

>BC110446-1|AAI10447.1|  920|Homo sapiens solute carrier family 14
           (urea transporter), member 2 protein.
          Length = 920

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 156 PFGIAVSLFLASRSHYRLLNP 218
           PF IAV+L+LA+  HY L  P
Sbjct: 239 PFNIAVTLYLAATGHYNLFFP 259


>BC065297-1|AAH65297.1|  747|Homo sapiens mediator complex subunit
           25 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 167 CCFIIFGFKVSLQTIKS*KKLFKQC*ELWRQCLLVCDS 280
           C  I  G   +LQ     KK+ +Q  +  R CLL+C+S
Sbjct: 111 CSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNS 148


>BC044597-1|AAH44597.1|  192|Homo sapiens TMEM41B protein protein.
          Length = 192

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 11  FYPLARIQYDPPKIKYYFKNPKYSRNVFNLTATMASLLVTV*ILC**FAFWY-CCFIIFG 187
           FY    + Y    I Y   N  YSR   +      SL ++  ++   F FW  C F+++ 
Sbjct: 109 FYVQVLVAYFATYIFYQLANICYSRLYISQYTLRVSLSLSTSLISCLFVFWTWCLFLLYA 168

Query: 188 FKVSLQT 208
           F  S +T
Sbjct: 169 FLFSWET 175


>BC035034-1|AAH35034.1|  192|Homo sapiens TMEM41B protein protein.
          Length = 192

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 11  FYPLARIQYDPPKIKYYFKNPKYSRNVFNLTATMASLLVTV*ILC**FAFWY-CCFIIFG 187
           FY    + Y    I Y   N  YSR   +      SL ++  ++   F FW  C F+++ 
Sbjct: 109 FYVQVLVAYFATYIFYQLANICYSRLYISQYTLRVSLSLSTSLISCLFVFWTWCLFLLYA 168

Query: 188 FKVSLQT 208
           F  S +T
Sbjct: 169 FLFSWET 175


>AY533507-1|AAS45401.1|  796|Homo sapiens ARC/mediator
           transcriptional coactivator subunit protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 167 CCFIIFGFKVSLQTIKS*KKLFKQC*ELWRQCLLVCDS 280
           C  I  G   +LQ     KK+ +Q  +  R CLL+C+S
Sbjct: 111 CSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNS 148


>AJ617479-1|CAE84581.1|  754|Homo sapiens activator interaction
           domain 1 protein protein.
          Length = 754

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 167 CCFIIFGFKVSLQTIKS*KKLFKQC*ELWRQCLLVCDS 280
           C  I  G   +LQ     KK+ +Q  +  R CLL+C+S
Sbjct: 111 CSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNS 148


>AF349446-1|AAL08485.1|  920|Homo sapiens urea transporter UT-A1
           protein.
          Length = 920

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 156 PFGIAVSLFLASRSHYRLLNP 218
           PF IAV+L+LA+  HY L  P
Sbjct: 239 PFNIAVTLYLAATGHYNLFFP 259


>AF261072-1|AAM20739.1|  747|Homo sapiens p78 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 167 CCFIIFGFKVSLQTIKS*KKLFKQC*ELWRQCLLVCDS 280
           C  I  G   +LQ     KK+ +Q  +  R CLL+C+S
Sbjct: 111 CSLIAEGLSTALQLFDDFKKMREQIGQTHRVCLLICNS 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,192,441
Number of Sequences: 237096
Number of extensions: 1871324
Number of successful extensions: 2553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2553
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)