Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    30   1.4  
AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical...    30   1.9  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    29   3.3  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    29   3.3  

>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 GIAVSLFLASRSHYRLLNPKKNFLSSVRNYGVNVC*FVIPI 284
           G++ S+F+   + Y +L  +  F   +R YG+ +   ++P+
Sbjct: 103 GVSTSIFVVFENRYYILFGESTFWKHIRKYGIAISYILVPL 143


>AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical
           protein Y71G12B.30 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 60  ILKILNIHGMYLTLQLQWPPSWLQFKYYVSNSPFGIAVSLFLASRSHYRLLNPKKNFL 233
           +L + +I+G     Q      +L    Y+   PF I V   L +   YRLL+P+K FL
Sbjct: 78  LLSMFDIYGFPHVSQKDKSSRYLFLGDYIDRGPFSIEVITLLFA---YRLLHPQKMFL 132


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 444 IGLLKKKISNTKMAVYLQGFFSSFKYFSRTLDF-YNYIF*IENIQF 578
           +GLLK +  N     YL  FFS F  F   ++F    I  IEN  F
Sbjct: 29  LGLLKTRGKNLGTYKYLMAFFSVFSIFYAIIEFILRPIMHIENTTF 74


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 444 IGLLKKKISNTKMAVYLQGFFSSFKYFSRTLDF-YNYIF*IENIQF 578
           +GLLK +  N     YL  FFS F  F   ++F    I  IEN  F
Sbjct: 29  LGLLKTRGKNLGTYKYLMAFFSVFSIFYAIIEFILRPIMHIENTTF 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,554
Number of Sequences: 27780
Number of extensions: 322735
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)