Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 251 WRQCLLVCDSYQCFV 295
           W  C ++C+ YQ F+
Sbjct: 285 WPGCEVICEDYQAFL 299


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 429 DYYDTIGLLKKKISNTKMAVYLQGFFSS 512
           D YD IG LK+  S        +GF +S
Sbjct: 48  DEYDEIGRLKRTCSGDISVTKCEGFCNS 75


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 429 DYYDTIGLLKKKISNTKMAVYLQGFFSS 512
           D YD IG LK+  S        +GF +S
Sbjct: 48  DEYDEIGRLKRTCSGDISVTKCEGFCNS 75


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 207 VCNETLKPKIMKQQYQK 157
           +   TL PK+ ++Q+QK
Sbjct: 335 ILKSTLTPKLARKQFQK 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,267
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)