Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30371
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t...    31   0.76 
At4g02410.1 68417.m00326 lectin protein kinase family protein co...    27   9.3  

>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 232

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 701 CVFCLKYSNNKV*DQNCYELKLNLK*ASLC 612
           C+F   YSNN V  +N  ++K+NL   SLC
Sbjct: 20  CLFVFTYSNNLVVAENSNKVKINLYYESLC 49


>At4g02410.1 68417.m00326 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain and PF00138: Legume
           lectins alpha domain
          Length = 674

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 488 LFTRFFFFVQILQS--HSGFLQLYFLNRKYTI*RPPTWRELSQNIRRLTSNLIL 643
           LFT FFFF+ +L    +S    L F    +   RPPT   + Q I  +TSN IL
Sbjct: 5   LFTIFFFFIILLSKPLNSSSQSLNFTYNSFH--RPPTNISI-QGIATVTSNGIL 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,420
Number of Sequences: 28952
Number of extensions: 281598
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)