Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30367
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 38 0.002
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 29 0.85
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 28 1.1
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 28 1.1
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.0
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.5
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.5
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 6.0
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 7.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 7.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.9
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 7.9
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 25 7.9
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 255 DQTVVPILLQGLSALAKERPPDPINYLAAYLL 350
++ V P+LL+G+ LA++RP +P+ +L +LL
Sbjct: 12 NEKVTPVLLEGMKILARDRPENPLQFLGQFLL 43
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 240 DSTVFDQTVVPILLQGLSALAKERPPDPINYLAAYLLK 353
DSTV++Q ++P+L Q L K+ PD + Y A L+
Sbjct: 554 DSTVYEQQIIPLLEQ----LTKDNDPD-VQYFATQALE 586
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -3
Query: 488 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 384
K P+I++ +A +V I + LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -3
Query: 488 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 384
K P+I++ +A +V I + LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 115 NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRI 222
+ N+ ++ TTK +S+KKI L E + + A ++S +
Sbjct: 88 SENELDEETTKNANSIKKISLEEVEKQRKAIKRSGV 123
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 632 KYIIGDCSICLQNFGLGQKWSP 697
+Y+ DC ICLQ GL + SP
Sbjct: 15 RYLRRDCVICLQKDGLRAQLSP 36
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 139 TTKIPDSVKKIILMEKDNEANANRK 213
T KI + VK I+++++DN NRK
Sbjct: 1165 TDKIMEVVKAILIVQRDNGDRENRK 1189
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 498 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 382
SV ++ S +EI+ HC H+++ +L + L Y + L
Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 488 KMFPVIALRLATFIVCIIIKLYLCLWVC-WLI 396
K P+I++ +A +V I + + L++C WL+
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLL 178
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.9
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = -2
Query: 504 QMSVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCLSWQVRK*FCF*VSKLLNNL 325
Q +++ N+S+ + + YF ++ L+ G+ ++Y + W+V F VS L+N
Sbjct: 402 QHNMKLNLSATMYFL-YFSFVYRAMTSLVQDGIRMEYHWLELWRVLFSFLDFVSVLINT- 459
Query: 324 SGPEDVL*L--MLIDLAAVWVLLSGQILSSR 238
S EDV L +++D+ A +++ +G L R
Sbjct: 460 SPTEDVTRLLELILDVLA-YIISNGDALVIR 489
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 4 AGIRHEESRIAPQ*NSI----IFFKVQLK*LQPMSESSTQ-INHNKEEQSTTKIPDSVKK 168
A + HE+ + P + + VQ + QP+S+ + I H + TT +PD+V K
Sbjct: 67 AVVLHEDKQYYPSAEEVYGSNVDIMVQEQDTQPLSQPIIEPIRHKRIAIETTNVPDTVYK 126
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 237 TDSTVFDQTVVPILLQGLSALAKERP 314
T+ T F+ T +P+L LS L KERP
Sbjct: 78 TEKTNFE-TFIPLLEDTLSLLEKERP 102
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 58 FFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSR 219
F V LK Q SS I H EE + I VKK +E + + N + +
Sbjct: 9 FMNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQIESEYKTNIENEKK 62
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 225 PQCSTDSTVFDQTVVPILLQGLSALAKERPPDPINYLAAYLLKNK 359
P+ + T D+++ L+ + A RPP N+L + L+ K
Sbjct: 14 PRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGK 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,005
Number of Sequences: 5004
Number of extensions: 56665
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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