Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30367
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0105 - 823302-823770,823902-824006,824149-824540                 29   3.5  
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    29   3.5  

>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91  MSESSTQINHNKEEQSTTKIPDS--VKKIILMEKDNEANANRKSRIDLNALPTRQYLTRQ 264
           +SE   Q++ +        + D   V+KI+    D++ +++ K+  D NA P RQ+  R+
Sbjct: 73  ISELQLQLSSDSPHDDDGHLDDKRRVRKIVSSSSDDDDHSSSKAAEDHNAKPLRQHKRRR 132


>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 85  QPMSESS-TQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALP 240
           QP+ ES  +++  N    S    P  V++I+  EK+ +AN  R  ++ +N  P
Sbjct: 232 QPIDESKRSKLGKNSRTLSRLLSPLEVRQILKAEKECQANQLRPEQLIVNGCP 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,044
Number of Sequences: 37544
Number of extensions: 306756
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)