Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30367
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)                68   6e-12
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 30   1.6  
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)        29   3.6  
SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6)                   29   3.6  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)
          Length = 371

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 31/39 (79%), Positives = 36/39 (92%)
 Frame = +3

Query: 255 DQTVVPILLQGLSALAKERPPDPINYLAAYLLKNKTTFE 371
           DQTVVPILLQGL+ LAKERPP+ I+YLAAYLLKNK+ +E
Sbjct: 330 DQTVVPILLQGLATLAKERPPNAIDYLAAYLLKNKSQYE 368



 Score = 35.5 bits (78), Expect = 0.042
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 133 QSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLTRQ*YP 273
           Q+   + ++++KII  EK+ EA+   K+++DL +LPTR YL +   P
Sbjct: 290 QAEIGLTENLQKIIEKEKE-EADKPTKAKVDLQSLPTRAYLDQTVVP 335


>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +1

Query: 82  LQPMSESSTQI--NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTR 246
           L+P+ E+ST    +H  +E+    +PDS +K  L+E +NE+ ++  ++ D    P++
Sbjct: 268 LEPVGEASTSRAGDHEMDEEEARCLPDSQRKTALVESENESWSDGGNKEDTPFDPSK 324


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 264 VVPILLQGLSALAKERPPDPINYLAAYL 347
           V+P L QGL    K RP DPI+++ + L
Sbjct: 662 VMPTLTQGLIEACKVRPDDPIDFVVSML 689


>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 541 QIL*FYYLTD*KIYTSLPYNMHMYTIVGQKKIYYR*L*YLSPEFWFR 681
           Q+L ++Y  D  +YT+LPY  ++  I+ +    +     + P+ WFR
Sbjct: 257 QVLLWHYYADKGLYTALPYAYNVRRIIYRPMKAFHFACCVPPKPWFR 303


>SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6)
          Length = 517

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +1

Query: 37  PQ*NSIIFFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKS 216
           P  +S+ F K  +   Q +S SST +N +K+E   T   DS  + +L   DN +N +++S
Sbjct: 363 PLYHSLHFLKDYINSKQSLSSSSTPLNTSKQELDCT--ADSDDQAVL-ASDNVSNVSQES 419


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 148 IPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLT--RQ*YPYCCK 285
           I  S +K+  +EK+ E NA    ++++N     +YL+   +  P+CCK
Sbjct: 735 IQKSEEKVASLEKEVEENACYLKKLEVNFTTLYRYLSPAYKETPFCCK 782


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,908
Number of Sequences: 59808
Number of extensions: 384814
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)