Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30367
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.       55   4e-08
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.6 protein.
          Length = 123

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 255 DQTVVPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELAN 380
           D TVVPILLQGL ALAK+RP +PI +LA +LL+ K  +   N
Sbjct: 75  DSTVVPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116


>U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.
          Length = 123

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 255 DQTVVPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELAN 380
           D TVVPILLQGL ALAK+RP +PI +LA +LL+ K  +   N
Sbjct: 75  DSTVVPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 234 STDSTVFDQTVVPILLQGLSALAKERPPDPINYLAAYLLK 353
           S +     +TV P+L + L+ +   RP DPI ++A +L K
Sbjct: 640 SENGVYLARTVAPVLTKALAEVLLRRPADPIGFIAEWLSK 679


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 264 VVPILLQGLSALAKERPPDPINYLAAYL 347
           V P L QGL+ +A ERP +PI +LA YL
Sbjct: 156 VWPKLSQGLARVAVERPDNPIKWLADYL 183


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 699 NGDHFWPKPKFWRQILQSPIIYFLLANYSV 610
           NG    P P FWR +    ++Y +L  +++
Sbjct: 143 NGPFIRPHPVFWRIVFGVSVVYLMLLQFTL 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,130
Number of Sequences: 27780
Number of extensions: 311072
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)