Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30367
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
 Frame = -3

Query: 56  IIEFY--CGAIRDSSC 15
           +I F+  CGAIR+S C
Sbjct: 64  VISFFGCCGAIRESHC 79


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 SQQGRTIHDENTRFGKENYIN 179
           S   +TIH+ N  + K  Y N
Sbjct: 84  SLSNKTIHNNNNNYKKLQYYN 104


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 SQQGRTIHDENTRFGKENYIN 179
           S   +TIH+ N  + K  Y N
Sbjct: 84  SLSNKTIHNNNNNYKKLQYYN 104


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 SQQGRTIHDENTRFGKENYIN 179
           S   +TIH+ N  + K  Y N
Sbjct: 84  SLSNKTIHNNNNNYKKLQYYN 104


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 SQQGRTIHDENTRFGKENYIN 179
           S   +TIH+ N  + K  Y N
Sbjct: 84  SLSNKTIHNNNNNYKKLQYYN 104


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 117 SQQGRTIHDENTRFGKENYIN 179
           S   +TIH+ N  + K  Y N
Sbjct: 317 SLSNKTIHNNNNNYKKLQYYN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,776
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)