Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30366
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.5  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   4.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   4.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -2

Query: 822 FQRGAPP-PLNPETAYRLPGQNGPGLGYPPGGDSTGGP 712
           ++   PP P +  T     G   P    PP   S+G P
Sbjct: 7   YEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSP 44


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 719 PVESPPGGYPNPGPFWPGS 775
           P  +PP GYP   P   GS
Sbjct: 89  PQNTPPAGYPMDVPHGMGS 107


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 719 PVESPPGGYPNPGPFWPGS 775
           P  +PP GYP   P   GS
Sbjct: 89  PQNTPPAGYPMDVPHGMGS 107


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 355 APVNINILTIVNT*RRPTTR 414
           APV I++  ++N  R+PT +
Sbjct: 488 APVKISVQEVLNRVRKPTKK 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,879
Number of Sequences: 336
Number of extensions: 5991
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)