Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30366
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   4.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   8.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.4  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 715 PYPPGKRCTLAFYLSSHAISK 653
           PYPP ++C  A YL+   + +
Sbjct: 372 PYPPSQQCAAAMYLAREMLGR 392


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 742 PTRGGLHRGPYPPGKRCTLAFYLSSHAISKN 650
           P  G L+      G+   L+ Y SSH+ISK+
Sbjct: 44  PVTGTLNSNKTTEGEEAKLSIYDSSHSISKS 74


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYP 739
           GAPG      + PP+ P      PG   P  GYP
Sbjct: 510 GAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,679,924
Number of Sequences: 5004
Number of extensions: 83944
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)