Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30366
(901 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.73
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.73
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 31 0.96
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 31 1.3
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 31 1.3
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24) 31 1.7
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 30 2.2
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 30 2.2
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 30 2.2
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 30 2.9
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 30 2.9
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 3.9
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 3.9
SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16) 29 3.9
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 29 3.9
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 5.1
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 5.1
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 29 5.1
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 6.8
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 6.8
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 6.8
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_41106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 8.9
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 28 8.9
>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = -2
Query: 411 GCRSALCIDNCQYINIYGCE-----LIIESLNKFT-GEFRYFF-GFNSHFSNY 274
G R A+ DN + I + E L + L T EFRYF+ G SH+SNY
Sbjct: 265 GARKAIWRDNLKKIQKHNAEGHSFTLAMNHLGDLTQDEFRYFYTGMRSHYSNY 317
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 31.9 bits (69), Expect = 0.73
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNG-PGLGYPPG 733
G+PG Q G P P+ P+ PG +G PG PPG
Sbjct: 1040 GSPGDRGQTGVPGPVGPDGDIGAPGADGVPGPKGPPG 1076
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.5 bits (68), Expect = 0.96
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 686 QGAPFTRWVGPPVESPPGGYPNPGP 760
+GAP+ R GPP PP G P PGP
Sbjct: 87 RGAPYGRG-GPPSRGPPRGPPLPGP 110
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 813 GAPPP--LNPETAYRLPGQNGPGLGYPPGGDSTG 718
G+P P ++PE+ L G NGP L PGG G
Sbjct: 945 GSPSPKDVSPESGVSLDGSNGPALNGSPGGRLQG 978
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 31.5 bits (68), Expect = 0.96
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 744 YPPGGDSTGGPTHRVKGAPWHFIFRHMRF 658
Y DS GP +R+ G W+ + RHM F
Sbjct: 133 YGSSSDSDSGPHYRISGMLWNELHRHMPF 161
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = -1
Query: 871 PPPFLRVKIPRGPRFWVPTGCPPPFKPGNRLPASWPEWAGVGVPTRGGLHRGPYPPG 701
PPP +P P PPP PG P P G P GG P PPG
Sbjct: 924 PPPGGNAPLPPPPPGGSAPSQPPP--PGGNAPPPPPPPGGSAPPPGGGAPPLPPPPG 978
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2
Query: 716 PPVESPPGGYPNPGPFWPGSR*AVSGFKGGGAPRWNPKPG 835
P PPGG P P PG + GGGAP P PG
Sbjct: 942 PSQPPPPGGNAPPPPPPPGGS---APPPGGGAPPLPPPPG 978
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPR--FWVPTGCPPPFKP 791
PT K PP ++ + RGPR F VP PPP KP
Sbjct: 318 PTPK-PPKMMKFSVQRGPRPHFHVPNWAPPP-KP 349
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 686 QGAPFTRWVGPPVES---PPGGYPN--PGPFWPGSR*AVSGFKGGGAP 814
Q P T + PP + PPGGYP P +PG+ G+ GG P
Sbjct: 220 QNHPLTNYPAPPPQGYAPPPGGYPGAPPAGGYPGAP-PPGGYPGGPPP 266
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 846 FQGAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYP-PGGDSTGGPTHRVKGAP 688
+Q P G+ APPP P+ +P QN P YP P P GAP
Sbjct: 196 YQQPPPGGY---APPPYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAP 246
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 875 GPPPFFKGKN-SKGPQVLGSNGVPPPL*TRKPLTGFLARMGRGWGTHPGGTPQGALP 708
GPPP G+ + P G G PPP + G+GWG P G QG P
Sbjct: 513 GPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGP 569
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 834 PGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGP 712
PG G G PPP + + P G G G PP G GGP
Sbjct: 539 PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGP 579
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -2
Query: 843 QGAPGFGFQRGAPPPLNPETAYRLPG--QNGPGLGYPPGGDSTGGPTHRVKGAPW 685
Q PG G G PPP + PG Q GP PPG GGP G W
Sbjct: 558 QPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPP---PPGAGQGGGPPPPGAGQGW 609
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = -2
Query: 834 PGFGFQRGAPPPLNPETAYRLPGQNGPGLGY-----PPGGDSTGGPTHRVKGAPW 685
PG G Q G PPP + GQ PG G PPG GGP G W
Sbjct: 506 PGAG-QGGGPPPPGAGQGW---GQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGW 556
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -3
Query: 875 GPPPFFKGKNSKGPQVLGSNGVPPPL*TR---KPLTGFLARMGRGWGTHPGGT 726
GPPP G+ P G G PPP + P G G+GWG P G+
Sbjct: 568 GPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPG----AGQGWGLPPPGS 616
>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
Length = 245
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -1
Query: 871 PPPFLRVKIPRGPRFWVPTGCPPPFKPG--NRLPAS-WPEWAGVGVPTRGGLHRGP 713
PPP L ++ RG F P PPP P P+S PE+ G+ V + G + P
Sbjct: 169 PPPVLSPQVYRGYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVSTRP 224
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 843 QGAPGFGFQRGAPPPLNPETAYRLPG-QNGPGLGYPPGGDSTGGPT 709
QG PG ++GA P P G Q GPGL P G GPT
Sbjct: 594 QGLPGARGKQGANGPRGPRGIKGASGLQGGPGLQGPGGFKGPIGPT 639
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 835 PRFWVP-TGCPPPFKPGNRLPASWPEWA-GVG-VPTRGGLHRGPYP 707
P W P TG P ++P P++W W G G PT G GP+P
Sbjct: 38 PSTWEPMTGAPSTWEPMTGAPSTWEPWTDGPGPYPTDG---PGPHP 80
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 713 GPPVESPPGGYPNPGPFWPGSR*AVSGFKGG----GAPRWNPKPGAP 841
G P S P GY GP PG++ V+ G GAP PGAP
Sbjct: 723 GYPPSSAPTGYQARGPAPPGAKPRVAAPYGAVPRPGAPAATAPPGAP 769
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 823 VPTGCPPPFKPGNRLPASWPEWAG---VGVPTRGGLHRGP 713
+P PP F PG P P +G G+P G+H+GP
Sbjct: 128 MPQMVPPGFPPGFPPPMGMPMMSGQHMPGMPPMQGMHQGP 167
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 807 PPPLNPETAYRLPGQNG-PGLGYPPGGDSTGGPTHR 703
P PL P+ LPG++G PG PG D GP R
Sbjct: 118 PVPLCPQGPQGLPGRDGLPGKAGLPGRDGAMGPPGR 153
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGP-GLGYPPGGDSTGG 715
G G+ RG P P P+ PG GP G P G + T G
Sbjct: 206 GPRGYNGSRGPPGPSGPQGQQGPPGTKGPQGFMGPRGHNGTAG 248
>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 843 QGAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGPTHR 703
QG G G RG+P PL +R PGQ+ G P G T P R
Sbjct: 891 QGGGGRGSPRGSPQPLE-NIYHRKPGQSIRGF-QPTGVSQTAQPISR 935
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 716 PPVESPPGGYPNPGP 760
PP+ PPGGYP P P
Sbjct: 216 PPMGGPPGGYPPPPP 230
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 686 QGAPFTRWVGPPVESPPG-GYPNPGPFWPG 772
+G P + PP PPG G P PGP PG
Sbjct: 382 EGRPPSSLGNPPPPPPPGRGAPPPGPMIPG 411
>SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
Length = 154
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 871 PPPFLRVKIPRGPRFWVPTGCPPPFKPG--NRLPAS-WPEWAGVGVPTRG 731
PPP L ++ RG F P PPP P P+S PE+ G+ V + G
Sbjct: 79 PPPALSPQVYRGYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSPG 128
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 725 ESPPGGYPNPGPFWPGSR*--AVSGFKGGGAPRWNPKPGAP 841
E PPG GP PGS+ V G+ G PR PG P
Sbjct: 47 EGPPGPQGTKGP--PGSQGLSGVQGYPGAPGPRGRSPPGPP 85
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -2
Query: 843 QGAPGFGFQRGAP----PPLNPETAYRLPGQNGP-GLGYPPGGDSTGGP 712
+G PG G P PP NP A PG GP G+ PPG GP
Sbjct: 63 KGPPGLPGPPGPPGFQGPPGNPAGAIGPPGLPGPNGVNGPPGELGDMGP 111
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 716 PPVESPPGGYPNPGPFWPGSR*AVSGFKGGGAPRWNP-KPGAP 841
PP E+PP P PGP P G +G P+ P PG P
Sbjct: 33 PPYEAPP---PPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPP 72
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 807 PPPLNPETAYRLPGQNGPGLGYPPGGDSTGGPTHRVKG 694
PPP+ P + P + PG+G+ P S PT + G
Sbjct: 92 PPPMMPRVSMPGPTSHLPGMGHNPALQSMAHPTMQRMG 129
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 834 PGFGFQRGAPPPLNPETAYRLPGQN--GPGLGYPPGGDSTGGPTHRVKG 694
PG G + P P A + PG + GPG G G S GGP KG
Sbjct: 762 PGNGRKGPGTSPDGPGNARKGPGTSPDGPGTGRKGPGTSPGGPGTGRKG 810
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Frame = +2
Query: 695 PFTRWVGPP-------VESPPGGYP---NPGPFWPGSR*AVSGFKGGGAPRWNPKPGAPW 844
P+ GPP V PPGGYP P +P G+ P+ P+PG P
Sbjct: 130 PYPGAAGPPMPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQPPPQAYPQPGYPP 189
Query: 845 NFYP 856
YP
Sbjct: 190 QGYP 193
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -2
Query: 846 FQGAPGFGFQRGAPPPLNPETAYRLPGQNG-PGL-GYP--PGGDSTGGPT 709
FQG PG GAP P+ Y PG +G PG+ G P PG GPT
Sbjct: 275 FQGPPGLDGMPGAPGMPGPQ-GY--PGGSGAPGIPGSPGMPGPPGPAGPT 321
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGP-RFWVPTGCPPPFKPGNRLPA 773
P + PP R P P R P G PPP PG R P+
Sbjct: 344 PPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPS 382
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGPTHRVKGAP 688
G+PG G + +PG G G+ PG G P + G+P
Sbjct: 1367 GSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSP 1417
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGPTHRVKGAP 688
G+PG G + +PG G G+ PG G P + G+P
Sbjct: 1375 GSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIPGSP 1425
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 834 PGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGG 730
P + P PL R PG PG G PGG
Sbjct: 351 PPWATSNSGPKPLMSTPVQRPPGMRPPGAGNGPGG 385
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGP-RFWVPTGCPPPFKPGNRLPA 773
P + PP R P P R P G PPP PG R P+
Sbjct: 256 PPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPS 294
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 822 FQRGAPPP--LNPETAYRLPGQNGPGLGYP 739
F RG PPP + P R+P Q P + YP
Sbjct: 493 FYRGPPPPRGMPPPPRQRMPSQGPPQVHYP 522
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -2
Query: 855 G*KFQGAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGPT 709
G QG PG +RG P+ + PG G PPG G T
Sbjct: 600 GLSIQGTPGMDGKRGPRGPIGEKGPTGFPGPPGDSDYGPPGDKGLKGNT 648
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYP--PGGDSTGGPTHRVKGAP 688
G PGF + GA P PG GP G P PG D GP V P
Sbjct: 879 GRPGFPGESGANGLPGPPGLAGSPGPRGPN-GEPGDPGMDGDKGPPGPVDAGP 930
>SB_41106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 125 IFLRRGLIYTTVFHHEDSLETSLETSRAFDEVSLA 229
IF R L HH+D T ++ S+AFD VS A
Sbjct: 12 IFAARQLRQKCKEHHQDLYTTFVDLSKAFDTVSRA 46
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGP-GLGYPPG 733
G PGF GAP E L GQ GP G PPG
Sbjct: 132 GRPGFDGAPGAPGSPGAEGKVGLTGQTGPRGPTGPPG 168
>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -3
Query: 899 LGLSSHRKGPPPFFKGKNSKGPQVLGSNGVPPPL*TRKPLTGFLARMGRGWGTHPGG 729
+G S GPP +G G GS G PP + P TG L +G + H G
Sbjct: 293 IGSPSIGSGPPGMEEGPPGTGGGPPGSVGAPPGMGDGPPGTGELIGIGVAFEFHKLG 349
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 849 KFQGAPGFGFQRGAPPPLNPETAYRLPGQNG-PGLGYPPGGDSTGGP 712
+ QG PG +RG P A GQ G PGL PG + GP
Sbjct: 194 EIQGPPGEPGERGEPGEPGAAGAKGAKGQPGPPGLVGEPGPEGEPGP 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,472,392
Number of Sequences: 59808
Number of extensions: 682437
Number of successful extensions: 1826
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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