Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30366
(901 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 34 0.11
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 33 0.20
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 32 0.45
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK... 31 0.79
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 31 0.79
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 31 0.79
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 31 1.0
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 31 1.4
At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70... 30 2.4
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 30 2.4
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 29 3.2
At1g63830.2 68414.m07224 proline-rich family protein contains pr... 29 3.2
At1g63830.1 68414.m07223 proline-rich family protein contains pr... 29 3.2
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 4.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 4.2
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 5.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 5.6
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 5.6
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 29 5.6
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 29 5.6
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 29 5.6
At5g67600.1 68418.m08524 expressed protein 28 7.3
At4g36430.1 68417.m05175 peroxidase, putative identical to perox... 28 7.3
At2g23660.1 68415.m02823 LOB domain family protein / lateral org... 28 7.3
At2g18140.1 68415.m02111 peroxidase, putative similar to peroxid... 28 7.3
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 28 9.7
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 28 9.7
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 28 9.7
At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative / leuc... 28 9.7
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = -1
Query: 886 PTVKAPPPFLRV--KIPRGPRFWVPTGCPPPFK-----PGNRLPASWPEWAGVGVPTRGG 728
P + PP +R ++P P F G PPP+ PG P + + +P GG
Sbjct: 146 PQISRPPQIIRPPGQMPPQPPFAGQGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGG 205
Query: 727 LHRGPYPP 704
+ RGP PP
Sbjct: 206 MMRGPPPP 213
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPRFWVPTGCP--PPFKPGNRLPASWPEWAGVGVPTRGGLHRGP 713
P VK PP K P P + PT P PP KP + P P A V PT+ +
Sbjct: 106 PPVK-PPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPV 164
Query: 712 YPPGK 698
YPP K
Sbjct: 165 YPPTK 169
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPRFWVPTGCP--PPFKPGNRLPASWPEWAGVGVPTRGGLHRGP 713
P VK PP + K P P P P PP KP + P P A V PT+ +
Sbjct: 86 PPVK-PPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPV 144
Query: 712 YPPGK 698
YPP K
Sbjct: 145 YPPTK 149
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -1
Query: 886 PTVKAP--PPFLRVKIPRGPRFWVPTGCP--PPFKPGNRLPASWPEWAGVGVPTRGGLHR 719
P KAP PP K P P + PT P PP KP + P P A V PT+ +
Sbjct: 126 PPTKAPVKPP---TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKP 182
Query: 718 GPYPPGK 698
PP K
Sbjct: 183 PVSPPAK 189
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/81 (32%), Positives = 30/81 (37%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPRFWVPTGCPPPFKPGNRLPASWPEWAGVGVPTRGGLHRGPYP 707
PT PPP + + P P PPP K G +L S P VP L GP
Sbjct: 773 PTAPPPPPLGQTRAPSAPP-------PPPPKLGTKLSPSGP-----NVPPTPALPTGPLS 820
Query: 706 PGKRCTLAFYLSSHAISKNSP 644
GK L L + K P
Sbjct: 821 SGKGRMLRVNLKNSPAKKLKP 841
>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 513
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 874 APPPFLRVKIPRGPRFWVPTGCPPPFKP-GNRLPASWPEWAGVGVPTRGGLHRGPYPPGK 698
APPP +IP G ++ G P P NR P S + G +RGG G YPP
Sbjct: 405 APPP----QIPAGGHYY--GGKPRGGAPVPNRYPPSGNQTGGYNNQSRGGYSSGAYPPQG 458
Query: 697 R 695
R
Sbjct: 459 R 459
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -1
Query: 874 APPPFLRVKIPRGPRFWV--PTGCPPPFKP-GNRLPASWPEWAGVGVPTRGGLHRGPYP 707
+PPP + V P PRF+ T PPP P G P S P G + PYP
Sbjct: 85 SPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSVPSSPPSPKGQSQGQQQPPYP 143
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPR---FWVPTGCPPPFKPGNRLPASWPEWAGVGVPTRGGLHRG 716
PT APP ++P GP + P G P P NR P S + G +RGG G
Sbjct: 399 PTNNAPP-----QVPAGPSHNFYGKPRGPPGP----NRYPPSGNQSGGYN-QSRGGYSSG 448
Query: 715 PYPPGKR 695
YPP R
Sbjct: 449 SYPPQGR 455
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 846 FQGAPGFGFQRGAPPPLNPETAYRLPGQNGP-GLGYPPGGDSTGGPTHRVKGAP 688
F PG+ F RG P +P T RLP GP G +PP G S P G P
Sbjct: 308 FPQRPGYNFPRGPPGSYDPTT--RLP--TGPYGAPFPP-GPSNNTPYAGTHGNP 356
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 689 GAPFTRWVGPPVESPPGGYPNPGPFWPGSR*AVSGFKGGGA 811
G P + PP PP GYP P PG V G G A
Sbjct: 54 GYPPAAYPPPPGAYPPAGYPGPSGPRPGFGGGVGGLIAGAA 94
>At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein 70
[Arabidopsis thaliana] GI:6746592; similar to heat shock
70 protein - Spinacia oleracea,PID:g2654208
Length = 718
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 789 ETAYRLPGQNGPGLGYPPGGD-STGGPTHRVKG 694
++ Y PG GPG G PGG+ ++ G + KG
Sbjct: 671 QSLYNQPGAGGPGAGPSPGGEGASSGDSSSSKG 703
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 695 PFTRWVGPPVESPPGGYPNPG---PFW---PGSR*AVSGFKGGGAPRWNPKPGAPWNFYP 856
PFT GPP +PP G PG PF PGSR +P + P GAP+ +P
Sbjct: 57 PFTA-SGPP-PAPPVGTMRPGQPSPFVSQIPGSRPPPPSSNSFPSPAYGPPGGAPFQRFP 114
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 700 KRCTLAFYLSSHAISKNSPLKPEVLMSNML*HTPSFNVKTQ 578
KRC LA S I+ P P VL++ L + + N KTQ
Sbjct: 1129 KRCYLARARSQININHRQPTTPSVLINGQLQNAATSNTKTQ 1169
>At1g63830.2 68414.m07224 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains 1 predicted transmembrane domain
Length = 232
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 822 FQRGAPPPLNPETAYRLPGQNGPGLGYPPGG 730
F + PPP+ +Y P Q P YPP G
Sbjct: 198 FDQPVPPPVGYPQSYPPPAQGYPPASYPPPG 228
>At1g63830.1 68414.m07223 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains 1 predicted transmembrane domain
Length = 232
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 822 FQRGAPPPLNPETAYRLPGQNGPGLGYPPGG 730
F + PPP+ +Y P Q P YPP G
Sbjct: 198 FDQPVPPPVGYPQSYPPPAQGYPPASYPPPG 228
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 846 FQGAPGFGFQR-GAPPPLN-PETAYRLPGQNGPGLGYPPG 733
F G P G+ GA PP P+ Y P P GYPPG
Sbjct: 13 FHGYPPAGYPPPGAYPPAGYPQQGYPPPPGAYPPAGYPPG 52
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 689 GAPFTRWVGPPVESPPGGYPNPG--PFWPGSR*AVSGFKG-GGAPRWNPKPGAP 841
G P + PP PP GYP PG P PG G+ G AP + P AP
Sbjct: 31 GYPQQGYPPPPGAYPPAGYP-PGAYPPAPGGYPPAPGYGGYPPAPGYGGYPPAP 83
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 840 GAPGFGFQRGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGP 712
G PG G G P P + P GPG+ PP GGP
Sbjct: 151 GPPG-GVPSGPPSGARP-IGFGSPPPMGPGMSMPPPSGMPGGP 191
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 713 GPP-VESPPGGYPNPGPFWPGSR*AVSGFKGGGAPR 817
GPP P GGY + P G G+ GG APR
Sbjct: 217 GPPSYGGPRGGYGSDAPSTGGRGGRSGGYDGGSAPR 252
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 713 GPP-VESPPGGYPNPGPFWPGSR*AVSGFKGGGAPR 817
GPP P GGY + P G G+ GG APR
Sbjct: 217 GPPSYGGPRGGYGSDAPSTGGRGGRSGGYDGGSAPR 252
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPRFWVPTGCPPPFKPGNRLPASWPEWAGVG 746
P+ APPP +PR PTG P N LP+S P + VG
Sbjct: 189 PSTLAPPPTPLPVVPREKPIAKPTG-PASNNGNNTLPSSSPGKSEVG 234
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -1
Query: 886 PTVKAPPPFLRVKIPRGPRFWVPTGCPPPFKPGNRLPASWPEWAGVGVPTRGGLHRGPYP 707
P V +PPP V P P + PPP + P PE+ G P G + P P
Sbjct: 431 PPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSPPPPSPEFEGPLPPVIGVSYASPPP 490
Query: 706 P 704
P
Sbjct: 491 P 491
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +2
Query: 713 GPPVESPPGGYPNPGPFWPGSR*AVSGFKGGGAPRWNPKPGAPWNFYP 856
GPP + PP G P P P GS GG AP P P N+ P
Sbjct: 240 GPPPQRPPMGGPPPPPHIGGSA-PPPPHMGGSAP---PPPHMGQNYGP 283
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 762 SGQEAGKRFPGLKGGGHPVGTQN-LGPLGIFTLKKGGG 872
SG E G GGG PVG N + PLG+ +L +G G
Sbjct: 56 SGNEGNHNHMGAIGGGGPVGFHNQMFPLGL-SLDQGKG 92
>At5g67600.1 68418.m08524 expressed protein
Length = 82
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 813 GAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGP 712
GAPPP P P GYPP G + G P
Sbjct: 10 GAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYP 43
>At4g36430.1 68417.m05175 peroxidase, putative identical to
peroxidase [Arabidopsis thaliana]
gi|6822093|emb|CAB71009; identical to cDNA class III
peroxidase ATP31, GI:17530561
Length = 331
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 294 NSHFSNYIAN*NIVSNSQVIFAAKETS 214
NS+F N I N ++++ QV+F++ E S
Sbjct: 258 NSYFKNLIENKGLLNSDQVLFSSNEKS 284
>At2g23660.1 68415.m02823 LOB domain family protein / lateral organ
boundaries domain family protein (LBD10) identical to
SP|O64836 Putative LOB domain protein 10 {Arabidopsis
thaliana}; similar to lateral organ boundaries (LOB)
domain-containing proteins from Arabidopsis thaliana
Length = 311
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 724 GVPPGWVPQPRPILARKP 777
G+PPG +PQ P++ R+P
Sbjct: 137 GMPPGVIPQGEPLMIREP 154
>At2g18140.1 68415.m02111 peroxidase, putative similar to peroxidase
ATP6a [Arabidopsis thaliana] gi|1429215|emb|CAA67310
Length = 337
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 294 NSHFSNYIAN*NIVSNSQVIFAAKETS 214
NS+F N I N ++++ QV+F++ E S
Sbjct: 263 NSYFKNLIENMGLLNSDQVLFSSNEQS 289
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 737 GGYPNPGPFWPGSR*AVSGFKGGGAPRWNPKPGAP 841
GG +PGP +PG R G G P PG P
Sbjct: 479 GGPVSPGPVYPGGRPGAGGLM-PGMPGTRRMPGMP 512
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 737 GGYPNPGPFWPGSR*AVSGFKGGGAPRWNPKPGAP 841
GG +PGP +PG R G G P PG P
Sbjct: 483 GGPVSPGPVYPGGRPGAGGLM-PGMPGTRRMPGMP 516
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -2
Query: 840 GAPGFGFQ---RGAPPPLNPETAYRLPGQNGPGLGYPPGGDSTGGP 712
G P FG PPP + A+ P G G+ PP G GGP
Sbjct: 148 GFPAFGPSGSVAAGPPPGSRPMAFGSPPPVGSGMSMPPSG-MIGGP 192
>At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative /
leucine--tRNA ligase, putative similar to SP|P36430
Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA
ligase) (LeuRS) {Bacillus subtilis}; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 973
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 892 FLPTVKAPPPFLRVKIPRGPRFWVPTGCPPPFKPGNRLPASWPEWAG 752
F PT PP + WV T P KP R ++ P+WAG
Sbjct: 555 FTPTGTGEPPLSKAVS------WVNTVDPSTGKPAKRETSTMPQWAG 595
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,040
Number of Sequences: 28952
Number of extensions: 488972
Number of successful extensions: 1588
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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