Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30364
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.59 
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   0.78 
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   1.8  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   4.2  
SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family protein|Schizosacchar...    27   4.2  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    26   5.5  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   7.3  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    25   9.6  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.6  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 125 TKCIEWRPNDLITIDSDTQDQ 187
           +KC++W P D IT+DS  Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 414 IGHEYLGVSMLEIERILPDSRFRRELHLLVVTGDA 310
           +G + LG+SM +  R++ DS +R  +  + V GDA
Sbjct: 324 LGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDA 358


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 69  GRPTLVFRSTPSCVNKSLYWS 7
           G  TLVF STP+  + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 307 FRITRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKNHLKTAKTR 447
           F+IT    Q++  ++   W +       +     AYLK H+K+ K R
Sbjct: 195 FQITNRATQLRLYSRRRFWNDCSILITNSLGTLNAYLKQHVKSYKQR 241


>SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 578 FEIRNQIPHDISRILRKYI*FGKHLFKTWDSSLGSTTMY 462
           FE+      D+   + KY+ FG+  F    + LGS+T +
Sbjct: 32  FEVEKIHNEDVKTAVEKYLNFGEWAFDQSSAFLGSSTWF 70


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 2   LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 124
           L +Q KD+ +QDGV    +V R     N +  +C +   DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 146 PNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDSRIFG 268
           P  L+++ +DT+D    +   V + +  +S NITSD  ++G
Sbjct: 205 PRALVSM-TDTEDAIEFMEKNVEKNKSAMSNNITSDILVWG 244


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/53 (18%), Positives = 23/53 (43%)
 Frame = +1

Query: 361 WQNTFYFQHGNAEIFVAYLKNHLKTAKTRHDRNTYMVVEPNDESQVLNKCLPN 519
           W+  +  QH  A +   YL    + A++ H +   ++   + +  V    +P+
Sbjct: 37  WKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACILAVRDTDGDVFGVFIPD 89


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 287 GIFMMRARRFANPMLCYRLGSVVC 216
           G+F+   RRF+ P+L Y  G+V C
Sbjct: 209 GVFLKNLRRFSCPILSY--GAVFC 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,111
Number of Sequences: 5004
Number of extensions: 75057
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)