Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30364
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107...    30   1.9  
11_04_0375 + 16933688-16933703,16936291-16937063                       28   7.6  

>10_08_1007 -
           22210263-22210400,22210506-22210547,22210626-22210727,
           22212239-22212337,22212413-22212473,22213311-22213432,
           22217700-22217786,22217958-22218041,22218141-22218220,
           22218404-22218467,22218904-22218972,22219099-22219179,
           22219626-22219694,22220108-22220140
          Length = 376

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 478 PNDESQVLNKCLPN*IYLRRIRLMSCGIWFLISNRGLTK 594
           P D  Q         +Y ++I L++C IW L+   G+T+
Sbjct: 6   PTDSDQFTGNSEIRLVYCKQIMLITCYIWVLVEANGVTR 44


>11_04_0375 + 16933688-16933703,16936291-16937063
          Length = 262

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 86  SIGMLCIVQNADGTKCIEWRPNDLITI 166
           ++G L  +Q  DG+  IEWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYIEWRNNVLINL 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,245,113
Number of Sequences: 37544
Number of extensions: 499533
Number of successful extensions: 1261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)