Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30364
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   32   0.48 
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  31   1.5  
SB_9621| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)                30   2.6  
SB_14686| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32530| Best HMM Match : PSK_trans_fac (HMM E-Value=1.6)             29   4.5  

>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 31  ARRGTSKDQCRSAGLRFQLNRDALHCTERRRN*MHRMETE-RLDHHRFRHSRSRMGRC*Y 207
           ++R  S+ + RS+     L R   +   R R+   R  +  R   HR+R SRSR  R  +
Sbjct: 296 SKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSRSRSTEHRYR-SRSRSPRRKH 354

Query: 208 RWSQTTDPKR*HNIG 252
           R S +T P R +  G
Sbjct: 355 RRSTSTSPSRRYRSG 369


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/52 (42%), Positives = 24/52 (46%)
 Frame = -1

Query: 598  VVS*GLCLKLETKFHTTSVVFSVNISNSANIYSRPGTRR*VRPPCTCSCRVL 443
            VVS G+C  L TK  T S   S   S    I S P T    RPPC   C+ L
Sbjct: 1734 VVS-GMCQDLITKSTTASTTKSTTAST---ITSTPTTTPTTRPPCNLHCQKL 1781


>SB_9621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 QPTNAVLDETGSLAEYVLFPTWKRRDIRG 410
           +P+N  LD +G+L  Y+LF  W  + I G
Sbjct: 31  EPSNVALDCSGALVAYILFRLWVTKIIPG 59


>SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)
          Length = 211

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 3   YTTSTKTCSRKTGYF*RPVSVGRSPISTQSGCSALYRTP 119
           Y +    C+  T  +  PVSV  SPIS  +   ++Y +P
Sbjct: 163 YNSPISVCNSLTSVYNSPVSVYNSPISVYNSSISVYNSP 201


>SB_14686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +3

Query: 537 NTTDVVWNLVSNFKQRPYETTLEAFSKLTDIVYYGNEDVNGKRDVSEEVADLL 695
           NT+++  N++S+   RP+E    A + ++D ++Y N  +NG   +   V++L+
Sbjct: 2   NTSEIT-NVISD-DCRPFEAIWNARNGISDTIFYSNIFINGILAIPTFVSNLI 52


>SB_32530| Best HMM Match : PSK_trans_fac (HMM E-Value=1.6)
          Length = 237

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 566 NQIPHDISRILRKYI*FGKHLFKTWDSSLGSTTM 465
           NQ+  DI  +  +++   + L K WD SLG + +
Sbjct: 29  NQVADDICELFEEFLRLDEPLLKHWDDSLGPSLL 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,252,293
Number of Sequences: 59808
Number of extensions: 618863
Number of successful extensions: 1539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)