Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30364
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003516-1|AAH03516.1|  648|Homo sapiens TBC1 domain family, mem...    32   2.8  
AK022230-1|BAB13991.1|  648|Homo sapiens protein ( Homo sapiens ...    32   2.8  

>BC003516-1|AAH03516.1|  648|Homo sapiens TBC1 domain family, member
           17 protein.
          Length = 648

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 510 FAELDIFTENTTDVVWNLVSNFKQRPYETTLEAFSKLTD 626
           F  L +F ++++    N+VS F Q PY TT  +FS++T+
Sbjct: 198 FHHLQLFDQDSS----NVVSRFLQDPYSTTFSSFSRVTN 232


>AK022230-1|BAB13991.1|  648|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12168 fis, clone MAMMA1000625, weakly similar to
           GYP7 PROTEIN. ).
          Length = 648

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 510 FAELDIFTENTTDVVWNLVSNFKQRPYETTLEAFSKLTD 626
           F  L +F ++++    N+VS F Q PY TT  +FS++T+
Sbjct: 198 FHHLQLFDQDSS----NVVSRFLQDPYSTTFSSFSRVTN 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,293,182
Number of Sequences: 237096
Number of extensions: 2739518
Number of successful extensions: 6821
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6820
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)